Name: Pseudomonas guguanensis CC-G9A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133945

Type strain:

Species: Pseudomonas guguanensis

Strain Designation: CC-G9A

Culture col. no.: BCRC 80438, JCM 18416

Strain history: C.-C. Young CC-G9A.

NCBI tax ID(s): 1198456 (species)

Section

Pseudomonas guguanensis CC-G9A is an aerobe, Gram-negative, motile bacterium that was isolated from hot spring.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas guguanensis**
	Full Scientific Name (LPSN)	Pseudomonas guguanensis Liu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30927]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #30927]	Cell length	2.35 µm

[Ref.: #30927]	Cell width	0.8 µm

[Ref.: #30927]	Cell shape	rod-shaped

[Ref.: #30927]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.575

[Ref.: #30927]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30927]			growth	20-42 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30927]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30927]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.974

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30927]		NaCl		growth	0-7	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30927]	acetate ChEBI	+	carbon source
[Ref.: #30927]	alanine ChEBI	+	carbon source
[Ref.: #30927]	citrate ChEBI	+	carbon source
[Ref.: #30927]	dextrin ChEBI	+	carbon source
[Ref.: #30927]	formate ChEBI	+	carbon source
[Ref.: #30927]	fructose ChEBI	+	carbon source
[Ref.: #30927]	galactose ChEBI	+	carbon source
[Ref.: #30927]	galacturonate ChEBI	+	carbon source
[Ref.: #30927]	gluconate ChEBI	+	carbon source
[Ref.: #30927]	glucosamine ChEBI	+	carbon source
[Ref.: #30927]	glucose ChEBI	+	carbon source
[Ref.: #30927]	glucuronamide ChEBI	+	carbon source
[Ref.: #30927]	glycerol ChEBI	+	carbon source
[Ref.: #30927]	glycogen ChEBI	+	carbon source
[Ref.: #30927]	lactate ChEBI	+	carbon source
[Ref.: #30927]	maltose ChEBI	+	carbon source
[Ref.: #30927]	melibiose ChEBI	+	carbon source
[Ref.: #30927]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30927]	tween 40 ChEBI	+	carbon source
[Ref.: #30927]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30927]	acid phosphatase	+	3.1.3.2
[Ref.: #30927]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30927]	catalase	+	1.11.1.6
[Ref.: #30927]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30927]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30927]	Sample type/isolated from	hot spring

[Ref.: #67770]	Sample type/isolated from	Hot spring water from Guguan
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ864237 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	7883
Soil Samples	868
Animal Samples	3943
Plant Samples	594
Total Samples	13288

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30927]	Pseudomonas guguanensis strain CC-G9A 16S ribosomal RNA gene, partial sequence	JQ864237	1483	GenBank	1198456 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas guguanensis JCM 18416	GCA_900104265	scaffold	GenBank	1198456 tax ID
[Ref.: #66792]	Pseudomonas guguanensis strain JCM 18416	1198456.3	wgs	PATRIC	1198456 tax ID	*
[Ref.: #66792]	Pseudomonas guguanensis JCM 18416	2663762796	draft	JGI IMG/M	1198456 tax ID	*

[Ref.: #30927]

GC-content

64.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas guguanensis JCM 18416 NCBI: GCA_900104265.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas guguanensis strain JCM 18416 PATRIC: 1198456.3
[Ref.: #69480]	motile	yes	87.628	yes
[Ref.: #69480]	gram-positive	no	98.875	yes
[Ref.: #69480]	anaerobic	no	97.803	yes
[Ref.: #69480]	aerobic	yes	93.382	yes
[Ref.: #69480]	halophile	no	86.794	no
[Ref.: #69480]	spore-forming	no	95.477	no
[Ref.: #69480]	glucose-util	yes	91.603	yes
[Ref.: #69480]	flagellated	yes	89.486	no
[Ref.: #69480]	thermophile	no	99.678	yes
[Ref.: #69480]	glucose-ferment	no	91.306	no

Availability in culture collections External links

[Ref.: #30927]

Culture collection no.

BCRC 80438, JCM 18416

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas mangrovi sp. nov., isolated from mangrove soil.	Ye Y, Chen C, Ren Y, Wang R, Zhang C, Han S, Ju Z, Zhao Z, Sun C, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003141	2019	*
Phylogeny	Pseudomonas fluvialis sp. nov., a novel member of the genus Pseudomonas isolated from the river Ganges, India.	Sudan SK, Pal D, Bisht B, Kumar N, Chaudhry V, Patil P, Sahni G, Mayilraj S, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002520	2017	*
Phylogeny	Pseudomonas guguanensis sp. nov., a gammaproteobacterium isolated from a hot spring.	Liu YC, Young LS, Lin SY, Hameed A, Hsu YH, Lai WA, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.047712-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30927

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27257 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27257

IJSEM 4591 2013 ( DOI 10.1099/ijs.0.047712-0 , PubMed 23918786 )

* These data were automatically processed and therefore are not curated

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Pseudomonas guguanensis JCM 18416

Pseudomonas guguanensis strain JCM 18416

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