Name: Sediminibacterium lactis LCJ02
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133942

Type strain:

Species: Sediminibacterium lactis

Strain Designation: LCJ02

Culture col. no.: KCCM 90108, JCM 18484

Strain history: D.-G. Lee LCJ02.

NCBI tax ID(s): 1162689 (species)

Section

Sediminibacterium lactis LCJ02 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from food product.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Sediminibacterium*
	Species	**Sediminibacterium lactis**
	Full Scientific Name (LPSN)	Sediminibacterium lactis (Lee et al. 2013) García-López et al. 2020

Synonym

Asinibacterium lactis

Information on morphological and physiological properties Morphology

[Ref.: #30922]	Gram stain	negative

[Ref.: #30922]	Cell length	1.15 µm

[Ref.: #30922]	Cell width	0.35 µm

[Ref.: #30922]	Cell shape	rod-shaped

[Ref.: #30922]	Motility	no

[Ref.: #30922]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30922]	growth	20-30 °C
[Ref.: #30922]	optimum	25 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #30922]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30922]			optimum	5.5
[Ref.: #30922]			growth	5.5-6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30922]

Oxygen tolerance

aerobe

[Ref.: #30922]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30922]		NaCl		growth	0-1	%

[Ref.: #30922]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30922]	arabinose ChEBI	+	carbon source
[Ref.: #30922]	esculin ChEBI	+	hydrolysis
[Ref.: #30922]	fructose ChEBI	+	carbon source
[Ref.: #30922]	galactose ChEBI	+	carbon source
[Ref.: #30922]	glycogen ChEBI	+	carbon source
[Ref.: #30922]	maltose ChEBI	+	carbon source
[Ref.: #30922]	melibiose ChEBI	+	carbon source
[Ref.: #30922]	sucrose ChEBI	+	carbon source
[Ref.: #30922]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30922]	acid phosphatase	+	3.1.3.2
[Ref.: #30922]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30922]	alpha-galactosidase	+	3.2.1.22

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30922]	Sample type/isolated from	food product

[Ref.: #67770]	Sample type/isolated from	Donkey (Equus asinus) milk powder in Suwon Province
[Ref.: #67770]	Host species	Equus asinus
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ638910 (>99% sequence identity) for Sediminibacterium lactis subclade from Microbeatlas

Aquatic Samples	2808
Soil Samples	761
Animal Samples	2084
Plant Samples	747
Total Samples	6400

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30922]	Asinibacterium lactis 16S ribosomal RNA gene, partial sequence	JQ638910	1441	GenBank	1162689 tax ID

[Ref.: #30922]	GC-content	49.2 mol%
[Ref.: #67770]	GC-content	49.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30922]

Culture collection no.

KCCM 90108, JCM 18484

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30922

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27252 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27252

IJSEM 3180 2013 ( DOI 10.1099/ijs.0.047639-0 , PubMed 23435252 )

* These data were automatically processed and therefore are not curated

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