Name: Asticcacaulis solisilvae AIM0088
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133939

Type strain:

Species: Asticcacaulis solisilvae

Strain Designation: AIM0088, CGM1-3EN

Culture col. no.: KCTC 32102, JCM 18544

Strain history: S. Kim CGM1-3EN.

NCBI tax ID(s): 1217274 (species)

Section

Asticcacaulis solisilvae AIM0088 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Asticcacaulis*
	Species	**Asticcacaulis solisilvae**
	Full Scientific Name (LPSN)	Asticcacaulis solisilvae Kim et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30915]	Gram stain	negative

[Ref.: #30915]	Cell length	5.25 µm

[Ref.: #30915]	Cell width	1.85 µm

[Ref.: #30915]	Cell shape	rod-shaped

[Ref.: #30915]	Motility	yes

[Ref.: #30915]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30915]	growth	10-37 °C
[Ref.: #30915]	optimum	27.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30915]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30915]			optimum	6
[Ref.: #30915]			growth	4.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30915]

Oxygen tolerance

aerobe

[Ref.: #30915]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30915]	alanine ChEBI	+	carbon source
[Ref.: #30915]	cellobiose ChEBI	+	carbon source
[Ref.: #30915]	fructose ChEBI	+	carbon source
[Ref.: #30915]	galactose ChEBI	+	carbon source
[Ref.: #30915]	glucose ChEBI	+	carbon source
[Ref.: #30915]	glycerol ChEBI	+	carbon source
[Ref.: #30915]	lactose ChEBI	+	carbon source
[Ref.: #30915]	maltose ChEBI	+	carbon source
[Ref.: #30915]	mannitol ChEBI	+	carbon source
[Ref.: #30915]	mannose ChEBI	+	carbon source
[Ref.: #30915]	pyruvate ChEBI	+	carbon source
[Ref.: #30915]	raffinose ChEBI	+	carbon source
[Ref.: #30915]	sorbitol ChEBI	+	carbon source
[Ref.: #30915]	sucrose ChEBI	+	carbon source
[Ref.: #30915]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30915]	acid phosphatase	+	3.1.3.2
[Ref.: #30915]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30915]	alpha-galactosidase	+	3.2.1.22

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30915]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Enrichment culture of forest soil from Cheonggyesan Mountain
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX144961 (>99% sequence identity) for Asticcacaulis solisilvae subclade from Microbeatlas

Aquatic Samples	747
Soil Samples	4208
Animal Samples	437
Plant Samples	1628
Total Samples	7020

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30915]	Asticcacaulis solisilvae strain CGM1-3EN 16S ribosomal RNA gene, partial sequence	JX144961	1353	GenBank	1217274 tax ID

[Ref.: #30915]	GC-content	63.7 mol%
[Ref.: #67770]	GC-content	63.7 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30915]

Culture collection no.

KCTC 32102, JCM 18544

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Asticcacaulis solisilvae sp. nov., isolated from forest soil.	Kim S, Gong G, Park TH, Um Y	Int J Syst Evol Microbiol	10.1099/ijs.0.047423-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30915

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27245 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27245

IJSEM 3829 2013 ( DOI 10.1099/ijs.0.047423-0 , PubMed 23687055 )

* These data were automatically processed and therefore are not curated

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