Name: Pseudonocardia ammonioxydans H9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13393

Type strain:

Species: Pseudonocardia ammonioxydans

Strain Designation: H9, CMGCC 4.1877

Culture col. no.: DSM 44958, CGMCC 4.1877, JCM 12462, CIP 109186

Strain history: CGMCC 4.1877 <-- Z.-H. Liu H9.

NCBI tax ID(s): 260086 (species)

Section

Pseudonocardia ammonioxydans H9 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from coastal sediment.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia ammonioxydans**
	Full Scientific Name (LPSN)	Pseudonocardia ammonioxydans Liu et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31603]	Gram stain	positive
[Ref.: #31603]	Cell shape	rod-shaped

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #20144]	Colony color	Brown beige (1011)
[Ref.: #20144]	Incubation period	10-14 days
[Ref.: #20144]	Cultivation medium used	ISP 2

[Ref.: #20144]	Colony color	Brown beige (1011)
[Ref.: #20144]	Incubation period	10-14 days
[Ref.: #20144]	Cultivation medium used	ISP 3

[Ref.: #20144]	Colony color	Beige (1001)
[Ref.: #20144]	Incubation period	10-14 days
[Ref.: #20144]	Cultivation medium used	ISP 4

[Ref.: #20144]	Colony color	Beige (1001)
[Ref.: #20144]	Incubation period	10-14 days
[Ref.: #20144]	Cultivation medium used	ISP 5

[Ref.: #20144]	Colony color	Beige (1001)
[Ref.: #20144]	Incubation period	10-14 days
[Ref.: #20144]	Cultivation medium used	ISP 6

[Ref.: #20144]	Colony color	Beige (1001)
[Ref.: #20144]	Incubation period	10-14 days
[Ref.: #20144]	Cultivation medium used	ISP 7

[Ref.: #31603]

Pigment production

yes

[Ref.: #20144]	Multicellular complex forming ability	yes
[Ref.: #20144]	Multicellular complex name	Aerial Mycelium
[Ref.: #20144]	Multicellular complex color	Cream
[Ref.: #20144]	Medium Name (multicellularity)	ISP 2

[Ref.: #20144]	Multicellular complex forming ability	yes
[Ref.: #20144]	Multicellular complex name	Aerial Mycelium
[Ref.: #20144]	Multicellular complex color	Cream
[Ref.: #20144]	Medium Name (multicellularity)	ISP 3

[Ref.: #20144]	Multicellular complex forming ability	no
[Ref.: #20144]	Medium Name (multicellularity)	ISP 4

[Ref.: #20144]	Multicellular complex forming ability	no
[Ref.: #20144]	Medium Name (multicellularity)	ISP 5

[Ref.: #20144]	Multicellular complex forming ability	yes
[Ref.: #20144]	Multicellular complex name	Aerial Mycelium
[Ref.: #20144]	Multicellular complex color	Cream
[Ref.: #20144]	Medium Name (multicellularity)	ISP 6

[Ref.: #20144]	Multicellular complex forming ability	no
[Ref.: #20144]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12211]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #12211]

Culture medium growth

[Ref.: #12211]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12211]

Culture medium composition

expand / minimize

[Ref.: #20144]

Culture medium

ISP 2

[Ref.: #20144]

Culture medium growth

[Ref.: #20144]

Culture medium composition

expand / minimize

[Ref.: #20144]

Culture medium

ISP 3

[Ref.: #20144]

Culture medium growth

[Ref.: #20144]

Culture medium composition

expand / minimize

[Ref.: #20144]

Culture medium

ISP 4

[Ref.: #20144]

Culture medium growth

[Ref.: #20144]

Culture medium composition

expand / minimize

[Ref.: #20144]

Culture medium

ISP 5

[Ref.: #20144]

Culture medium growth

[Ref.: #20144]

Culture medium composition

expand / minimize

[Ref.: #20144]

Culture medium

ISP 6

[Ref.: #20144]

Culture medium growth

[Ref.: #20144]

Culture medium composition

expand / minimize

[Ref.: #20144]

Culture medium

ISP 7

[Ref.: #20144]

Culture medium growth

[Ref.: #20144]

Culture medium composition

expand / minimize

[Ref.: #12211]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12211]

Culture medium growth

[Ref.: #12211]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12211]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12211]	growth	28 °C
[Ref.: #20144]	optimum	28 °C
[Ref.: #31603]	growth	10-40 °C
[Ref.: #31603]	optimum	10-40 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12211]	Temperature range	mesophilic
[Ref.: #20144]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31603]			optimum	7
[Ref.: #31603]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #12211]	Oxygen tolerance	aerobe
[Ref.: #31603]	Oxygen tolerance	aerobe

[Ref.: #31603]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31603]		NaCl		growth	0-8	%
[Ref.: #31603]		NaCl		optimum	3.5	%

[Ref.: #31603]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #20144]	arabinose ChEBI	-
[Ref.: #31603]	arabinose ChEBI	+	carbon source
[Ref.: #20144]	cellulose ChEBI	+
[Ref.: #20144]	fructose ChEBI	+
[Ref.: #31603]	galactose ChEBI	+	carbon source
[Ref.: #20144]	glucose ChEBI	+
[Ref.: #31603]	maltose ChEBI	+	carbon source
[Ref.: #20144]	mannitol ChEBI	+
[Ref.: #31603]	mannose ChEBI	+	carbon source
[Ref.: #20144]	myo-inositol ChEBI	-
[Ref.: #31603]	nitrate ChEBI	+	reduction
[Ref.: #20144]	raffinose ChEBI	+
[Ref.: #20144]	rhamnose ChEBI	-
[Ref.: #31603]	ribitol ChEBI	+	carbon source
[Ref.: #20144]	sucrose ChEBI	+
[Ref.: #20144]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #31603]		hydrogen sulfide ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31603]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #31603]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20144]	925	not determinedn.d.	+	+	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	propanol degradation	100	7 of 7
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ethylmalonyl-CoA pathway	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	phenylmercury acetate degradation	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	100	9 of 9
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	IAA biosynthesis	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	phenol degradation	95	19 of 20
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	tryptophan metabolism	86.84	33 of 38
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	purine metabolism	85.11	80 of 94
[Ref.: #66794]	urea cycle	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	selenocysteine biosynthesis	83.33	5 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	methionine metabolism	80.77	21 of 26
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	3-phenylpropionate degradation	80	12 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	vitamin B12 metabolism	79.41	27 of 34
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	lipid metabolism	77.42	24 of 31
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	degradation of sugar acids	76	19 of 25
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	oxidative phosphorylation	72.53	66 of 91
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	aclacinomycin biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	sphingosine metabolism	66.67	4 of 6
[Ref.: #66794]	daunorubicin biosynthesis	66.67	6 of 9
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	carotenoid biosynthesis	59.09	13 of 22
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	58.82	10 of 17
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	benzoyl-CoA degradation	57.14	4 of 7
[Ref.: #66794]	cholesterol biosynthesis	54.55	6 of 11
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12211]	Sample type/isolated from	coastal sediment
[Ref.: #12211]	Geographic location (country and/or sea, region)	Jiao-Dong peninsula, Tsingdao city
[Ref.: #12211]	Country	China
[Ref.: #12211]	Country ISO 3 Code	CHN
[Ref.: #12211]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Coastal sediment
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiao-Dong Peninsula near Tsingdao City, Shandong Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12211]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20144]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12211]	Pseudonocardia ammonioxydans strain H9 16S ribosomal RNA gene, partial sequence	AY500143	1430	ENA	260086 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudonocardia ammonioxydans CGMCC 4.1877	GCA_900115005	scaffold	GenBank	260086 tax ID
[Ref.: #66792]	Pseudonocardia ammonioxydans strain CGMCC 4.1877	260086.4	wgs	PATRIC	260086 tax ID	*
[Ref.: #66792]	Pseudonocardia ammonioxydans CGMCC 4.1877	2671180038	draft	JGI IMG/M	260086 tax ID	*

[Ref.: #12211]	GC-content	69.6 mol%
[Ref.: #67770]	GC-content	69.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	73.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudonocardia ammonioxydans CGMCC 4.1877 NCBI: GCA_900115005.1
[Ref.: #69480]	anaerobic	no	98.64	no
[Ref.: #69480]	spore-forming	yes	74.839	no
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	thermophile	no	95.932	yes
[Ref.: #69480]	motile	no	84.304	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudonocardia ammonioxydans CGMCC 4.1877 NCBI: GCA_900115005.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #12211]

Culture collection no.

DSM 44958, CGMCC 4.1877, JCM 12462, CIP 109186

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia tritici sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Song J, Qiu S, Zhao J, Han C, Wang Y, Sun X, Jiang S, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-01210-2	2018	*
Phylogeny	Pseudonocardia ammonioxydans sp. nov., isolated from coastal sediment.	Liu ZP, Wu JF, Liu ZH, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63878-0	2006	*

References

#12211

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44958

#20144

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31603

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27891 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27891

IJSEM 555 2006 ( DOI 10.1099/ijs.0.63878-0 , PubMed 16514026 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudonocardia ammonioxydans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Pseudonocardia ammonioxydans CGMCC 4.1877

Pseudonocardia ammonioxydans CGMCC 4.1877

Change proposal

Change proposal