Pseudonocardia ammonioxydans (DSM 44958, CGMCC 4.1877, JCM 12462)

Name: Pseudonocardia ammonioxydans (DSM 44958, CGMCC 4.1877, JCM 12462)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13393

Type strain

Strain Designation H9, CMGCC 4.1877

Culture col. no. DSM 44958 CGMCC 4.1877 JCM 12462 H9 CIP 109186 2 more

NCBI tax ID(s) 260086

Special Collections DSMZ JCM CIP Wink compendium Literature strains

History DSMZ <- Z. Liu, CGMCC JCM <-- CGMCC 4.1877 <-- Z.-H. Liu H9. CIP <- 2006, JCM <- CGMCC 4.1877 <- Z.-H. Liu H9

Links

Pseudonocardia ammonioxydans H9 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from coastal sediment.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 290997

CGMCC 4.1877,JCM 12462,DSM 44958,CIP 109186

@ref 20215

Last LPSN update 2026-05-29 08:28:02

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species Pseudonocardia ammonioxydans

Full scientific name Pseudonocardia ammonioxydans Liu et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31603	positive	rod-shaped
116342	positive	rod-shaped
125439	positive		98.019

Colony morphology

@ref	Colony color	Incubation period	Medium used	Hemolysis ability
20144	Brown beige (1011)	10-14 days	ISP 2
20144	Brown beige (1011)	10-14 days	ISP 3
20144	Beige (1001)	10-14 days	ISP 4
20144	Beige (1001)	10-14 days	ISP 5
20144	Beige (1001)	10-14 days	ISP 6
20144	Beige (1001)	10-14 days	ISP 7
116342				0

Multicellular morphology

@ref	Complex name	Complex color	Medium name
20144	Aerial Mycelium	Cream	ISP 2
20144	Aerial Mycelium	Cream	ISP 3
20144			ISP 4
20144			ISP 5
20144	Aerial Mycelium	Cream	ISP 6
20144			ISP 7

Pigmentation

31603

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12211	LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)	Medium recipe at MediaDive	Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
20144	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20144	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20144	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20144	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20144	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20144	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
12211	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
116342	CIP Medium 13	Medium recipe at CIP
116342	CIP Medium 368	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
12211	positive	growth	28
20144	positive	optimum	28
31603	positive	growth	10-40
31603	positive	optimum	10-40
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
31603	positive	optimum	7
31603	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
12211	aerobe
31603	aerobe
116342	obligate aerobe
125439	obligate aerobe	99.681

Spore formation

@ref	Spore formation
31603
116342

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31603	NaCl	positive	growth	0-8 %
31603	NaCl	positive	optimum	3.5 %

Observation

@ref	Observation
31603	aggregates in chains
67770	quinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
20144	22599 ChEBI	arabinose	-
31603	22599 ChEBI	arabinose	+	carbon source
20144	62968 ChEBI	cellulose	+
20144	28757 ChEBI	fructose	+
31603	28260 ChEBI	galactose	+	carbon source
20144	17234 ChEBI	glucose	+
31603	17306 ChEBI	maltose	+	carbon source
20144	29864 ChEBI	mannitol	+
31603	37684 ChEBI	mannose	+	carbon source
20144	17268 ChEBI	myo-inositol	-
31603	17632 ChEBI	nitrate	+	reduction
116342	17632 ChEBI	nitrate	+	reduction
116342	16301 ChEBI	nitrite	-	reduction
20144	16634 ChEBI	raffinose	+
20144	26546 ChEBI	rhamnose	-
31603	15963 ChEBI	ribitol	+	carbon source
20144	17992 ChEBI	sucrose	+
20144	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31603	16136 ChEBI	hydrogen sulfide
116342	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
31603	catalase	+	1.11.1.6
116342	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
116342	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
31603	urease	+	3.5.1.5
116342	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	propanol degradation	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	phenylmercury acetate degradation	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	starch degradation	100	10 of 10
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	CO2 fixation in Crenarchaeota	100	9 of 9
66794	CMP-KDO biosynthesis	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	enterobactin biosynthesis	100	3 of 3
66794	octane oxidation	100	3 of 3
66794	cardiolipin biosynthesis	100	7 of 7
66794	ceramide biosynthesis	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	resorcinol degradation	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	IAA biosynthesis	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	phenol degradation	95	19 of 20
66794	photosynthesis	92.86	13 of 14
66794	citric acid cycle	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	propionate fermentation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	tryptophan metabolism	86.84	33 of 38
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	purine metabolism	85.11	80 of 94
66794	urea cycle	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	vitamin B6 metabolism	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	factor 420 biosynthesis	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	peptidoglycan biosynthesis	80	12 of 15
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	vitamin B12 metabolism	79.41	27 of 34
66794	heme metabolism	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	degradation of sugar acids	76	19 of 25
66794	alanine metabolism	75.86	22 of 29
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	metabolism of disaccharids	72.73	8 of 11
66794	proline metabolism	72.73	8 of 11
66794	oxidative phosphorylation	72.53	66 of 91
66794	cysteine metabolism	72.22	13 of 18
66794	tyrosine metabolism	71.43	10 of 14
66794	aclacinomycin biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	degradation of sugar alcohols	68.75	11 of 16
66794	methane metabolism	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	sphingosine metabolism	66.67	4 of 6
66794	daunorubicin biosynthesis	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	histidine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	d-xylose degradation	63.64	7 of 11
66794	carnitine metabolism	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	hydrogen production	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of pentoses	57.14	16 of 28
66794	lysine metabolism	57.14	24 of 42
66794	benzoyl-CoA degradation	57.14	4 of 7
66794	cholesterol biosynthesis	54.55	6 of 11
66794	coenzyme M biosynthesis	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	vitamin E metabolism	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	myo-inositol biosynthesis	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	polyamine pathway	47.83	11 of 23
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	ascorbate metabolism	45.45	10 of 22
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	chlorophyll metabolism	27.78	5 of 18
66794	catecholamine biosynthesis	25	1 of 4

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20144	not determinedn.d.	+	+	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	-	-
116342	-	-	+	+	-	+	+	-	-	-	+	+	-	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12211	coastal sediment	Jiao-Dong peninsula, Tsingdao city	China	CHN	Asia
67770	Coastal sediment	Jiao-Dong Peninsula near Tsingdao City, Shandong Province	China	CHN	Asia
116342	Environment, Coastal sediment	Jiao Dong peninsula	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12211	1	Risk group (German classification) According to TRBA 466
20144	1	German classification According to TRBA 466
116342	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2671180038 annotated assembly for Pseudonocardia ammonioxydans CGMCC 4.1877	scaffold	GCA_900115005	260086.4	2671180038	260086	37.85

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12211	Pseudonocardia ammonioxydans strain H9 16S ribosomal RNA gene, partial sequence	AY500143	1430		260086

GC content

@ref	GC-content (mol%)	Method
12211	69.6
67770	69.6	thermal denaturation, midpoint method (Tm)
67770	73.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2671180038 annotated assembly for Pseudonocardia ammonioxydans CGMCC 4.1877
BV-BRC: 260086.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	98.02	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.68	no
125439	motility	BacteriaNetⓘ	no	83.33	no
125439	spore_formation	BacteriaNetⓘ	yes	45.88	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudonocardia ammonioxydans strain CGMCC 4.1877
PATRIC: 260086.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.87	no
125438	anaerobic	anaerobicⓘ	no	94.86	yes
125438	spore-forming	spore-formingⓘ	yes	70.20	yes
125438	aerobic	aerobicⓘ	yes	89.98	yes
125438	thermophilic	thermophileⓘ	no	94.90	yes
125438	flagellated	motile2+ⓘ	no	85.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	3-Hydroxypyridine Dehydrogenase HpdA Is Encoded by a Novel Four-Component Gene Cluster and Catalyzes the First Step of 3-Hydroxypyridine Catabolism in Ensifer adhaerens HP1.	Wang H, Wang X, Ren H, Wang X, Lu Z.	Appl Environ Microbiol	10.1128/aem.01313-20	2020
Phylogeny	Pseudonocardia tritici sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Song J, Qiu S, Zhao J, Han C, Wang Y, Sun X, Jiang S, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-01210-2	2018
Phylogeny	Pseudonocardia ammonioxydans sp. nov., isolated from coastal sediment.	Liu ZP, Wu JF, Liu ZH, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63878-0	2006

References

#12211	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44958
#20144	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27891	IJSEM 555 2006 ( DOI 10.1099/ijs.0.63878-0 , PubMed 16514026 )
#31603	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27891
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#116342	Collection of Institut Pasteur ; Curators of the CIP; CIP 109186
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Pseudonocardia ammonioxydans (DSM 44958, CGMCC 4.1877, JCM 12462)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900115005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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