Neobacillus thermocopriae (CCTCC AB 2012030, KACC 16700, SgZ-7)

Name: Neobacillus thermocopriae (CCTCC AB 2012030, KACC 16700, SgZ-7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133927

Type strain

Strain Designation SgZ-7

Culture col. no. CCTCC AB 2012030 KACC 16700 SgZ-7

NCBI tax ID(s) 1215031

Special Collections Literature strains

Neobacillus thermocopriae SgZ-7 is a facultative anaerobe, spore-forming, thermophilic prokaryote that was isolated from compost.

spore-forming Gram-positive motile rod-shaped facultative anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

Culture Collection Numbers

CCTCC AB 2012030 KACC 16700 SgZ-7

@ref 20215

Last LPSN update 2025-12-16 10:01:55

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Cytobacillaceae

Genus Neobacillus

Species Neobacillus thermocopriae

Full scientific name Neobacillus thermocopriae (Han et al. 2013) Patel and Gupta 2020

Synonyms (1)

Bacillus thermocopriae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30895	positive	1.5 µm	0.6 µm	rod-shaped

Pigmentation

30895

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30895	positive	growth	40-60	thermophilic
30895	positive	optimum	50	thermophilic

Culture pH

@ref	Ability	Type	PH	PH range
30895	positive	optimum	7.2
30895	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30895	facultative anaerobe
125439	obligate aerobe	95

Spore formation

@ref	Spore formation	Confidence
30895
125438		94.411

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30895	NaCl	positive	growth	0-3 %
30895	NaCl	positive	optimum	1 %

Observation

30895

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30895	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
30895	37054 ChEBI	3-hydroxybutyrate	+	carbon source
30895	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
30895	30089 ChEBI	acetate	+	carbon source
30895	17128 ChEBI	adipate	+	carbon source
30895	16449 ChEBI	alanine	+	carbon source
30895	22599 ChEBI	arabinose	+	carbon source
30895	33984 ChEBI	fucose	+	carbon source
30895	24265 ChEBI	gluconate	+	carbon source
30895	17234 ChEBI	glucose	+	carbon source
30895	28087 ChEBI	glycogen	+	carbon source
30895	27570 ChEBI	histidine	+	carbon source
30895	17240 ChEBI	itaconate	+	carbon source
30895	24996 ChEBI	lactate	+	carbon source
30895	25115 ChEBI	malate	+	carbon source
30895	15792 ChEBI	malonate	+	carbon source
30895	17306 ChEBI	maltose	+	carbon source
30895	29864 ChEBI	mannitol	+	carbon source
30895	28053 ChEBI	melibiose	+	carbon source
30895	506227 ChEBI	N-acetylglucosamine	+	carbon source
30895	17632 ChEBI	nitrate	+	reduction
30895	26271 ChEBI	proline	+	carbon source
30895	17272 ChEBI	propionate	+	carbon source
30895	33942 ChEBI	ribose	+	carbon source
30895	17814 ChEBI	salicin	+	carbon source
30895	9300 ChEBI	suberic acid	+	carbon source
30895	17992 ChEBI	sucrose	+	carbon source
30895	31011 ChEBI	valerate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30895	catalase	+	1.11.1.6
30895	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting

Isolation

30895

Sample typecompost

Taxonmaps

69479

Global distribution of 16S sequence JX113681 (>99% sequence identity) for Neobacillus from Microbeatlas

Aquatic Samples	61
Soil Samples	356
Animal Samples	69
Plant Samples	28
Total Samples	514

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1097503v1 assembly for Neobacillus thermocopriae SgZ-7	contig	GCA_010975035	1215031.6	8066992054	1215031	68.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30895	Bacillus thermocopriae strain SgZ-7 16S ribosomal RNA gene, partial sequence	JX113681	1448		1215031

GC content

30895

GC-content (mol%)46.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neobacillus thermocopriae SgZ-7
NCBI: GCA_010975035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	84.30	no
125439	motility	BacteriaNetⓘ	yes	83.20	no
125439	gram_stain	BacteriaNetⓘ	variable	79.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neobacillus thermocopriae SgZ-7
NCBI: GCA_010975035.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.83	no
125438	anaerobic	anaerobicⓘ	no	90.28	yes
125438	aerobic	aerobicⓘ	yes	53.33	yes
125438	spore-forming	spore-formingⓘ	yes	94.41	no
125438	thermophilic	thermophileⓘ	no	51.39	yes
125438	flagellated	motile2+ⓘ	yes	82.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Neobacillus sedimentimangrovi sp. nov., a Thermophilic Bacterium Isolated from Mangrove Sediment.	Tang R, Zhang Q, Narsing Rao MP, Liu GH, Che JM, Lei M, Liu B, Li WJ, Zhou SG	Curr Microbiol	10.1007/s00284-021-02360-9	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27225	IJSEM 3024 2013 ( DOI 10.1099/ijs.0.046953-0 , PubMed 23396718 )
#30895	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27225
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Neobacillus thermocopriae (CCTCC AB 2012030, KACC 16700, SgZ-7)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_010975035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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