Name: Flavobacterium squillarum CMJ-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133916

Type strain:

Species: Flavobacterium squillarum

Strain Designation: CMJ-5

Culture col. no.: BCRC 80405, LMG 26890, KCTC 23915

Strain history: <- W-M Chen, Nat Kaohsiung Marine Uinv.,Taiwan

NCBI tax ID(s): 1119057 (species)

Section

Flavobacterium squillarum CMJ-5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium squillarum**
	Full Scientific Name (LPSN)	Flavobacterium squillarum Sheu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30870]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30870]	Cell length	1 µm

[Ref.: #30870]	Cell width	0.45 µm

[Ref.: #30870]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30870]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #30870]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30870]	growth	20-35 °C
[Ref.: #30870]	optimum	30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #30870]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30870]			optimum	7
[Ref.: #30870]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30870]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30870]		NaCl		growth	0-0.5	%

[Ref.: #30870]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30870]	alanine ChEBI	+	carbon source
[Ref.: #30870]	asparagine ChEBI	+	carbon source
[Ref.: #30870]	aspartate ChEBI	+	carbon source
[Ref.: #30870]	glutamate ChEBI	+	carbon source
[Ref.: #30870]	glycine ChEBI	+	carbon source
[Ref.: #30870]	ornithine ChEBI	+	carbon source
[Ref.: #30870]	proline ChEBI	+	carbon source
[Ref.: #30870]	uridine ChEBI	+	carbon source
[Ref.: #30870]	urocanic acid ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30870]	acid phosphatase	+	3.1.3.2
[Ref.: #30870]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30870]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30870]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30870]	Sample type/isolated from	freshwater (river, lake, pond)

[Ref.: #67771]	Sample type/isolated from	From a freshwater shrimp culture pond
[Ref.: #67771]	Geographic location (country and/or sea, region)	the vicinity of Pingtung
[Ref.: #67771]	Country	Taiwan
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ029111 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	5359
Soil Samples	410
Animal Samples	496
Plant Samples	219
Total Samples	6484

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30870]	Flavobacterium squillarum strain CMJ-5 16S ribosomal RNA gene, partial sequence	JQ029111	1404	GenBank	1119057 tax ID

[Ref.: #67771]

GC-content

42.4 mol%

Availability in culture collections External links

[Ref.: #30870]

Culture collection no.

BCRC 80405, LMG 26890, KCTC 23915

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium lutivivi sp. nov., isolated from activated sludge.	Feng Q, Han L, Nogi Y, Hong Q, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000892	2016	*
Phylogeny	Flavobacterium squillarum sp. nov., isolated from a freshwater shrimp culture pond, and emended descriptions of Flavobacterium haoranii, Flavobacterium cauense, Flavobacterium terrae and Flavobacterium aquatile.	Sheu SY, Lin YS, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.046425-0	2012	*
Phylogeny	Flavobacterium stagni sp. nov., isolated from a freshwater reservoir.	Chen WM, Guo YP, Kwon SW, Sheu C, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.003488	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30870

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27200 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27200

IJSEM 2239 2013 ( DOI 10.1099/ijs.0.046425-0 , PubMed 23148098 )

* These data were automatically processed and therefore are not curated

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