Reyranella soli (KACC 13034, NBRC 108950, KIS14-15)

Name: Reyranella soli (KACC 13034, NBRC 108950, KIS14-15)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133909

Type strain

Strain Designation KIS14-15

Culture col. no. KACC 13034 NBRC 108950 KIS14-15

NCBI tax ID(s) 1230389

Special Collections Literature strains

Links

Reyranella soli KIS14-15 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133218

NBRC 108950

@ref 20215

Last LPSN update 2025-12-16 10:01:55

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Reyranellaceae

Genus Reyranella

Species Reyranella soli

Full scientific name Reyranella soli Kim et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30852	negative	6.5 µm	0.9 µm	rod-shaped
125439	negative				96.2
125438	negative				92.5

Pigmentation

30852

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30852	positive	growth	20-37
30852	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30852	positive	optimum	6.5
30852	positive	growth	04-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30852	aerobe
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125439		96.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30852	NaCl	positive	growth	0-1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30852	16449 ChEBI	alanine	+	carbon source
30852	4853 ChEBI	esculin	+	hydrolysis
30852	33984 ChEBI	fucose	+	carbon source
30852	24265 ChEBI	gluconate	+	carbon source
30852	28087 ChEBI	glycogen	+	carbon source
30852	17240 ChEBI	itaconate	+	carbon source
30852	24996 ChEBI	lactate	+	carbon source
30852	26271 ChEBI	proline	+	carbon source
30852	26546 ChEBI	rhamnose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30852	acid phosphatase	+	3.1.3.2
30852	alkaline phosphatase	+	3.1.3.1
30852	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

30852

Sample typesoil

Taxonmaps

69479

Global distribution of 16S sequence JX260424 (>99% sequence identity) for Reyranella soli from Microbeatlas

Aquatic Samples	128
Soil Samples	1134
Animal Samples	56
Plant Samples	68
Total Samples	1386

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM799249v1 assembly for Reyranella soli NBRC 108950	contig	GCA_007992495	1230389.3	2886942716	1230389

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30852	Reyranella soli strain KIS14-15 16S ribosomal RNA gene, partial sequence	JX260424	1429		1230389

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Reyranella soli NBRC 108950
NCBI: GCA_007992495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.30	no
125439	motility	BacteriaNetⓘ	yes	63.90	no
125439	gram_stain	BacteriaNetⓘ	negative	96.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Reyranella soli strain NBRC 108950
PATRIC: 1230389.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.50	no
125438	anaerobic	anaerobicⓘ	no	93.51	yes
125438	spore-forming	spore-formingⓘ	no	83.46	no
125438	aerobic	aerobicⓘ	yes	80.32	yes
125438	thermophilic	thermophileⓘ	no	96.05	yes
125438	flagellated	motile2+ⓘ	no	57.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reyranella terrae sp. nov., isolated from an agricultural soil, and emended description of the genus Reyranella.	Lee H, Kim DU, Lee S, Park S, Yoon JH, Seong CN, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001913	2017
Phylogeny	Reyranella graminifolii sp. nov., isolated from bamboo (Phyllostachys bambusoides) litter.	Lee JC, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.062968-0	2014
Phylogeny	Reyranella soli sp. nov., isolated from forest soil, and emended description of the genus Reyranella Pagnier et al. 2011.	Kim SJ, Ahn JH, Lee TH, Weon HY, Hong SB, Seok SJ, Whang KS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.045922-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30852	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27182 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Reyranella soli (KACC 13034, NBRC 108950, KIS14-15)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007992495

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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