Name: Reyranella soli KIS14-15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133909

Type strain:

Species: Reyranella soli

Strain Designation: KIS14-15

Culture col. no.: KACC 13034, NBRC 108950

NCBI tax ID(s): 1230389 (species)

Section

Reyranella soli KIS14-15 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Reyranellaceae*
	Genus	*Reyranella*
	Species	**Reyranella soli**
	Full Scientific Name (LPSN)	Reyranella soli Kim et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30852]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #30852]	Cell length	6.5 µm

[Ref.: #30852]	Cell width	0.9 µm

[Ref.: #30852]	Cell shape	rod-shaped

[Ref.: #30852]	Motility	no

[Ref.: #30852]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30852]			growth	20-37 °C
[Ref.: #30852]			optimum	30 °C

[Ref.: #30852]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30852]			optimum	6.5
[Ref.: #30852]			growth	04-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30852]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.904

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30852]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30852]	alanine ChEBI	+	carbon source
[Ref.: #30852]	esculin ChEBI	+	hydrolysis
[Ref.: #30852]	fucose ChEBI	+	carbon source
[Ref.: #30852]	gluconate ChEBI	+	carbon source
[Ref.: #30852]	glycogen ChEBI	+	carbon source
[Ref.: #30852]	itaconate ChEBI	+	carbon source
[Ref.: #30852]	lactate ChEBI	+	carbon source
[Ref.: #30852]	proline ChEBI	+	carbon source
[Ref.: #30852]	rhamnose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30852]	acid phosphatase	+	3.1.3.2
[Ref.: #30852]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30852]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30852]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX260424 (>99% sequence identity) for Reyranella soli from Microbeatlas

Aquatic Samples	128
Soil Samples	1134
Animal Samples	56
Plant Samples	68
Total Samples	1386

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30852]	Reyranella soli strain KIS14-15 16S ribosomal RNA gene, partial sequence	JX260424	1429	GenBank	1230389 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Reyranella soli NBRC 108950	GCA_007992495	contig	GenBank	1230389 tax ID	*
[Ref.: #66792]	Reyranella soli strain NBRC 108950	1230389.3	wgs	PATRIC	1230389 tax ID	*
[Ref.: #66792]	Reyranella soli NBRC 108950	2886942716	draft	JGI IMG/M	1230389 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Reyranella soli strain NBRC 108950 PATRIC: 1230389.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Reyranella soli strain NBRC 108950 PATRIC: 1230389.3
[Ref.: #69480]	motile	no	86.294	no
[Ref.: #69480]	gram-positive	no	96.162	no
[Ref.: #69480]	anaerobic	no	98.455	yes
[Ref.: #69480]	aerobic	yes	88.549	no
[Ref.: #69480]	halophile	no	94.519	yes
[Ref.: #69480]	spore-forming	no	91.616	no
[Ref.: #69480]	thermophile	no	99.086	no
[Ref.: #69480]	glucose-util	yes	80.14	no
[Ref.: #69480]	flagellated	no	95.894	yes
[Ref.: #69480]	glucose-ferment	no	87.783	no

Availability in culture collections External links

[Ref.: #30852]

Culture collection no.

KACC 13034, NBRC 108950

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reyranella terrae sp. nov., isolated from an agricultural soil, and emended description of the genus Reyranella.	Lee H, Kim DU, Lee S, Park S, Yoon JH, Seong CN, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001913	2017	*
Phylogeny	Reyranella graminifolii sp. nov., isolated from bamboo (Phyllostachys bambusoides) litter.	Lee JC, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.062968-0	2014	*
Phylogeny	Reyranella soli sp. nov., isolated from forest soil, and emended description of the genus Reyranella Pagnier et al. 2011.	Kim SJ, Ahn JH, Lee TH, Weon HY, Hong SB, Seok SJ, Whang KS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.045922-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30852

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27182 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27182

IJSEM 3164 2013 ( DOI 10.1099/ijs.0.045922-0 , PubMed 23435248 )

* These data were automatically processed and therefore are not curated

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Reyranella soli strain NBRC 108950

Reyranella soli strain NBRC 108950

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