Chryseobacterium ginsengisoli (KCTC 23760, JCM 18019, DCY 63)

Name: Chryseobacterium ginsengisoli (KCTC 23760, JCM 18019, DCY 63)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133901

Type strain

Culture col. no. KCTC 23760 JCM 18019 DCY 63

NCBI tax ID(s) 363853

Special Collections JCM KCTC Literature strains

History D.-C. Yang and Y.-J. Kim DCY63. <- DC Yang, Kyunghee Univ.

Links

Chryseobacterium ginsengisoli KCTC 23760 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from plant associated.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27251

KCTC 23760,JCM 18019

@ref 20215

Last LPSN update 2025-12-16 10:01:55

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium ginsengisoli

Full scientific name Chryseobacterium ginsengisoli Nguyen et al. 2013

BacDive ID	Other strains from **Chryseobacterium ginsengisoli** (1)	Type strain
154124	C. ginsengisoli CCUG 52463, KCTC 12571

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
30827	negative	1.3 µm	0.5 µm	rod-shaped
67771				rod-shaped
67771	negative

Pigmentation

30827

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30827	positive	growth	04-37
30827	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30827	positive	optimum	7
30827	positive	growth	5.0-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30827	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30827	NaCl	positive	growth	0-4 %

Observation

@ref	Observation
30827	aggregates in clumps
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30827	4853 ChEBI	esculin	+	hydrolysis
30827	17234 ChEBI	glucose	+	carbon source
30827	28087 ChEBI	glycogen	+	carbon source
30827	17306 ChEBI	maltose	+	carbon source
30827	37684 ChEBI	mannose	+	carbon source
30827	26271 ChEBI	proline	+	carbon source
30827	26546 ChEBI	rhamnose	+	carbon source
30827	17814 ChEBI	salicin	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30827	acid phosphatase	+	3.1.3.2
30827	alkaline phosphatase	+	3.1.3.1
30827	catalase	+	1.11.1.6
30827	cytochrome oxidase	+	1.9.3.1
30827	gelatinase	+
30827	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Plants

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
30827	plant associated
67770	Soil recovered from the roots of ginseng cultivated on Sokri Mountain	Chungcheong Province	Republic of Korea	KOR	Asia
67771	From rhizosphere of ginseng	Sokri Mountain, ChungCheong province	Republic of Korea	KOR	Asia	36.5439	127.871 36.5439/127.871

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954232v1 assembly for Chryseobacterium ginsengisoli JCM 18019	contig	GCA_039542325	363853	71.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30827	Chryseobacterium ginsengisoli strain DCY 63 16S ribosomal RNA gene, partial sequence	JN852949	1438		363853

GC content

30827

GC-content (mol%)31.6

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Wheat Rhizosphere-Derived Bacteria Protect Soybean from Soilborne Diseases.	Yin C, Larson M, Lahr N, Paulitz T.	Plant Dis	10.1094/pdis-08-23-1713-re	2024
	Wheat Rhizosphere-Derived Bacteria Protect Soybean from Soilborne Diseases	Yin C, Larson M, Lahr N, Paulitz T.	Plant Dis		2024
Phylogeny	Genome-Based Taxonomic Classification of Bacteroidetes.	Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.	Front Microbiol	10.3389/fmicb.2016.02003	2016
Phylogeny	Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum.	Nguyen NL, Kim YJ, Hoang VA, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.045427-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27157	IJSEM 2975 2013 ( DOI 10.1099/ijs.0.045427-0 , PubMed 23378110 )
#30827	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27157
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium ginsengisoli (KCTC 23760, JCM 18019, DCY 63)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039542325

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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