Name: Flavobacterium jumunjinense KCTC 23618
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133900

Type strain:

Species: Flavobacterium jumunjinense

Culture col. no.: KCTC 23618, CECT 7955, HME 7102, CIP 110815

Strain history: CIP <- 2014, CECT <- 2011, Y. Joung, Hankuk Univ., Gyeonggi, Korea: strain HME7102

NCBI tax ID(s): 998845 (species)

SI-ID 391331

KCTC 23618, CECT 7955, CIP 110815

Section

Flavobacterium jumunjinense KCTC 23618 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium jumunjinense**
	Full Scientific Name (LPSN)	Flavobacterium jumunjinense Joung et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30822]	Gram stain	negative
[Ref.: #120365]	Gram stain	negative

[Ref.: #30822]	Cell length	1.45 µm

[Ref.: #30822]	Cell width	0.55 µm

[Ref.: #30822]	Cell shape	rod-shaped
[Ref.: #120365]	Cell shape	rod-shaped

[Ref.: #30822]	Motility	yes
[Ref.: #120365]	Motility	no

[Ref.: #30822]	Flagellum arrangement	gliding

[Ref.: #30822]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #120365]

Culture medium

CIP Medium 13

[Ref.: #120365]

Culture medium growth

[Ref.: #120365]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120365]

Culture medium

CIP Medium 566

[Ref.: #120365]

Culture medium growth

[Ref.: #120365]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #30822]			growth	15-30 °C
[Ref.: #30822]			optimum	25 °C

[Ref.: #30822]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30822]			optimum	8
[Ref.: #30822]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30822]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30822]		NaCl		growth	0-3	%
[Ref.: #30822]		NaCl		optimum	1	%

[Ref.: #30822]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30822]	adipate ChEBI	+	carbon source
[Ref.: #30822]	arabinose ChEBI	+	carbon source
[Ref.: #30822]	citrate ChEBI	+	carbon source
[Ref.: #30822]	glucose ChEBI	+	carbon source
[Ref.: #30822]	glutamate ChEBI	+	carbon source
[Ref.: #30822]	malate ChEBI	+	carbon source
[Ref.: #30822]	maltose ChEBI	+	carbon source
[Ref.: #30822]	mannose ChEBI	+	carbon source
[Ref.: #30822]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30822]	proline ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30822]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30822]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #30822]	catalase	+	1.11.1.6
[Ref.: #30822]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30822]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30822]	Sample type/isolated from	seawater

[Ref.: #120365]	Sample type/isolated from	Environment, Lagoon water
[Ref.: #120365]	Geographic location (country and/or sea, region)	Lagoon water closed to Jumunjin
[Ref.: #120365]	Country	Republic of Korea
[Ref.: #120365]	Country ISO 3 Code	KOR
[Ref.: #120365]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF317279 (>99% sequence identity) for Flavobacterium jumunjinense subclade from Microbeatlas

Aquatic Samples	284
Soil Samples	11
Animal Samples	25
Plant Samples	14
Total Samples	334

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120365]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30822]	Flavobacterium jumunjinense strain HME7102 16S ribosomal RNA gene, partial sequence	JF317279	1470	GenBank	998845 tax ID

[Ref.: #30822]

GC-content

36.5 mol%

Availability in culture collections External links

[Ref.: #30822]

Culture collection no.

KCTC 23618, CECT 7955, HME 7102, CIP 110815

[Ref.: #91637]

SI-ID 391331

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium jejuensis sp. nov., isolated from marine brown alga Ecklonia cava.	Park SH, Kim JY, Kim YJ, Heo MS	J Microbiol	10.1007/s12275-015-5280-4	2015	*
Phylogeny	Flavobacterium maris sp. nov. isolated from shallow sediments of the Sea of Japan.	Romanenko LA, Tanaka N, Svetashev VI, Kurilenko VV, Mikhailov VV	Arch Microbiol	10.1007/s00203-015-1128-x	2015	*
Phylogeny	Flavobacterium jumunjinense sp. nov., isolated from a lagoon, and emended descriptions of Flavobacterium cheniae, Flavobacterium dongtanense and Flavobacterium gelidilacus.	Joung Y, Kim H, Joh K	Int J Syst Evol Microbiol	10.1099/ijs.0.045286-0	2013	*
Phylogeny	Flavobacterium tibetense sp. nov., isolated from a wetland.	Phurbu D, Lu H, Xue X, Tian Y, Pema Y, Ma C, Xing P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003124	2018	*
Phylogeny	Characterization of Flavobacterium aquimarinum sp. nov., a halotolerant bacterium isolated from seawater.	Kristyanto S, Nguyen TM, Chaudhary DK, Lee SS, Kim J	J Microbiol	10.1007/s12275-018-7454-3	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30822

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27153 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91637

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391331.1 )

#120365 Collection of Institut Pasteur ; Curators of the CIP; CIP 110815

#27153

IJSEM 3937 2013 ( DOI 10.1099/ijs.0.045286-0 , PubMed 23710048 )

* These data were automatically processed and therefore are not curated

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