Hirschia litorea (KCTC 32081, CCUG 62793, M-M23)

Name: Hirschia litorea (KCTC 32081, CCUG 62793, M-M23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133891

Type strain

Strain Designation M-M23

Culture col. no. KCTC 32081 CCUG 62793 M-M23

NCBI tax ID(s) 1199156

Special Collections CCUG KCTC Literature strains

Links

Hirschia litorea M-M23 is an aerobe, Gram-negative, coccus-shaped prokaryote that was isolated from marine sediment.

Gram-negative coccus-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 411866

KCTC 32081,CCUG 62793

@ref 20215

Last LPSN update 2025-12-16 10:01:54

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Hyphomonadaceae

Genus Hirschia

Species Hirschia litorea

Full scientific name Hirschia litorea Park and Yoon 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30784	negative	2.45 µm	0.6 µm	coccus-shaped

Colony morphology

62901

Incubation period2-3 days

Pigmentation

30784

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30784	positive	growth	04-37
30784	positive	optimum	25	mesophilic
62901	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
30784	positive	optimum	7.5
30784	positive	growth	5.5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30784	aerobe
62901	aerobe

Spore formation

30784

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30784	NaCl	positive	optimum	2 %

Observation

30784

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30784	17057 ChEBI	cellobiose	+	carbon source
30784	4853 ChEBI	esculin	+	hydrolysis
30784	28260 ChEBI	galactose	+	carbon source
30784	17234 ChEBI	glucose	+	carbon source
30784	17306 ChEBI	maltose	+	carbon source
30784	17632 ChEBI	nitrate	+	reduction
30784	17814 ChEBI	salicin	+	carbon source
30784	17992 ChEBI	sucrose	+	carbon source
30784	27082 ChEBI	trehalose	+	carbon source
30784	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30784	alkaline phosphatase	+	3.1.3.1
30784	catalase	+	1.11.1.6
30784	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
30784	marine sediment
62901	Seashore sediment	2009	Geoje Island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ995780 (>99% sequence identity) for Hirschia litorea subclade from Microbeatlas

Aquatic Samples	288
Soil Samples	3
Animal Samples	4
Plant Samples	1
Total Samples	296

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266507v1 assembly for Hirschia litorea CCUG 62793	scaffold	GCA_042665075	1199156	58.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30784	Hirschia litorea strain M-M23 16S ribosomal RNA gene, partial sequence	JQ995780	1372		1199156

GC content

30784

GC-content (mol%)45.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hirschia litorea sp. nov., isolated from seashore sediment, and emended description of the genus Hirschia.	Park S, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.044297-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30784	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27115 (see below)
#62901	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62793
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hirschia litorea (KCTC 32081, CCUG 62793, M-M23)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042665075

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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