Name: Mucilaginibacter jinjuensis YC7004
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133884

Type strain:

Species: Mucilaginibacter jinjuensis

Strain Designation: YC7004

Culture col. no.: KACC 16571, NBRC 108856

NCBI tax ID(s): 1176721 (species)

Section

Mucilaginibacter jinjuensis YC7004 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter jinjuensis**
	Full Scientific Name (LPSN)	Mucilaginibacter jinjuensis Khan et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30762]	Gram stain	negative

[Ref.: #30762]	Cell length	1.305 µm

[Ref.: #30762]	Cell width	0.385 µm

[Ref.: #30762]	Cell shape	rod-shaped

[Ref.: #30762]	Motility	no

[Ref.: #30762]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30762]			growth	04-35 °C
[Ref.: #30762]			optimum	30 °C

[Ref.: #30762]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30762]			optimum	6
[Ref.: #30762]			growth	4-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30762]

Oxygen tolerance

facultative anaerobe

[Ref.: #30762]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30762]		NaCl		growth	0-1	%

[Ref.: #30762]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30762]	alanine ChEBI	+	carbon source
[Ref.: #30762]	cellobiose ChEBI	+	carbon source
[Ref.: #30762]	esculin ChEBI	+	hydrolysis
[Ref.: #30762]	galactose ChEBI	+	carbon source
[Ref.: #30762]	glucose ChEBI	+	carbon source
[Ref.: #30762]	lactose ChEBI	+	carbon source
[Ref.: #30762]	maltose ChEBI	+	carbon source
[Ref.: #30762]	mannose ChEBI	+	carbon source
[Ref.: #30762]	melibiose ChEBI	+	carbon source
[Ref.: #30762]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30762]	proline ChEBI	+	carbon source
[Ref.: #30762]	raffinose ChEBI	+	carbon source
[Ref.: #30762]	serine ChEBI	+	carbon source
[Ref.: #30762]	sucrose ChEBI	+	carbon source
[Ref.: #30762]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30762]	acid phosphatase	+	3.1.3.2
[Ref.: #30762]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30762]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30762]	catalase	+	1.11.1.6
[Ref.: #30762]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30762]	Sample type/isolated from	plant associated
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30762]	Mucilaginibacter jinjuensis strain YC7004 16S ribosomal RNA gene, partial sequence	JQ765855	1482	GenBank	1176721 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mucilaginibacter jinjuensis KACC 16571	GCA_028596025	complete	GenBank	1176721 tax ID	*

[Ref.: #30762]

GC-content

40 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mucilaginibacter jinjuensis KACC 16571 NCBI: GCA_028596025.1
[Ref.: #69480]	motile	no	89.557	yes
[Ref.: #69480]	flagellated	no	97.975	yes
[Ref.: #69480]	gram-positive	no	97.38	yes
[Ref.: #69480]	anaerobic	no	99.025	yes
[Ref.: #69480]	aerobic	yes	77.347	yes
[Ref.: #69480]	halophile	no	95.879	no
[Ref.: #69480]	spore-forming	no	91.96	yes
[Ref.: #69480]	glucose-ferment	no	89.278	no
[Ref.: #69480]	thermophile	no	99.702	yes
[Ref.: #69480]	glucose-util	yes	85.28	yes

Availability in culture collections External links

[Ref.: #30762]

Culture collection no.

KACC 16571, NBRC 108856

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil.	Seo YL, Khan SA, Kim HM, Chun BH, Han DM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004321	2020	*
Phylogeny	Mucilaginibacter polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Mucilaginibacter.	Chen XY, Zhao R, Tian Y, Kong BH, Li XD, Chen ZL, Li YH	Int J Syst Evol Microbiol	10.1099/ijs.0.055335-0	2014	*
Phylogeny	Mucilaginibacter jinjuensis sp. nov., with xylan-degrading activity.	Khan H, Chung EJ, Kang DY, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.043828-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30762

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27093 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27093

IJSEM 1267 2013 ( DOI 10.1099/ijs.0.043828-0 , PubMed 22798644 )

* These data were automatically processed and therefore are not curated

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Mucilaginibacter jinjuensis KACC 16571

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