Name: Microbulbifer pacificus SPO729
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133863

Type strain:

Species: Microbulbifer pacificus

Strain Designation: SPO729

Culture col. no.: KCCM 42667, JCM 14507

Strain history: K. K. Kwon SPO729.

NCBI tax ID(s): 407164 (species)

Section

Microbulbifer pacificus SPO729 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sponge.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Microbulbiferaceae*
	Genus	*Microbulbifer*
	Species	**Microbulbifer pacificus**
	Full Scientific Name (LPSN)	Microbulbifer pacificus Jeong et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30706]	Gram stain	negative

[Ref.: #30706]	Cell length	5 µm

[Ref.: #30706]	Cell width	0.35 µm

[Ref.: #30706]	Cell shape	rod-shaped

[Ref.: #30706]	Motility	no

[Ref.: #30706]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30706]	growth	15-45 °C
[Ref.: #30706]	optimum	35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30706]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30706]			optimum	7.25
[Ref.: #30706]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30706]

Oxygen tolerance

aerobe

[Ref.: #30706]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30706]		NaCl		growth	01-07	%
[Ref.: #30706]		NaCl		optimum	2.5	%

[Ref.: #30706]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30706]	fructose ChEBI	+	carbon source
[Ref.: #30706]	glucose ChEBI	+	carbon source
[Ref.: #30706]	maltose ChEBI	+	carbon source
[Ref.: #30706]	nitrate ChEBI	+	reduction
[Ref.: #30706]	sorbitol ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30706]	acid phosphatase	+	3.1.3.2
[Ref.: #30706]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30706]	catalase	+	1.11.1.6
[Ref.: #30706]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30706]	Sample type/isolated from	marine sponge

[Ref.: #67770]	Sample type/isolated from	Marine sponge found at a depth of 20 m in a tropical area
[Ref.: #67770]	Geographic location (country and/or sea, region)	Weno Island, Chuuk State
[Ref.: #67770]	Country	Micronesia, Federated States of
[Ref.: #67770]	Country ISO 3 Code	FSM
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ993341 (>99% sequence identity) for Microbulbifer pacificus from Microbeatlas

Aquatic Samples	44
Soil Samples	35
Animal Samples	2
Plant Samples	11
Total Samples	92

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30706]	Microbulbifer pacificus strain SPO729 16S ribosomal RNA gene, partial sequence	DQ993341	1495	GenBank	407164 tax ID

[Ref.: #30706]	GC-content	57.9 mol%
[Ref.: #67770]	GC-content	57.9 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #30706]

Culture collection no.

KCCM 42667, JCM 14507

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbulbifer harenosus sp. nov., an alginate-degrading bacterium isolated from coastal sand.	Huang H, Mo K, Hu Y, Liu M, Zhu J, Zou X, Bao S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003945	2020	*
Phylogeny	Microbulbifer gwangyangensis sp. nov. and Microbulbifer pacificus sp. nov., isolated from marine environments.	Jeong SH, Yang SH, Jin HM, Kim JM, Kwon KK, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.042606-0	2012	*
Phylogeny	Microbulbifer okhotskensis sp. nov., isolated from a deep bottom sediment of the Okhotsk Sea.	Romanenko L, Kurilenko V, Otstavnykh N, Velansky P, Isaeva M, Mikhailov V	Arch Microbiol	10.1007/s00203-022-03161-9	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30706

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27037 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27037

IJSEM 1335 2013 ( DOI 10.1099/ijs.0.042606-0 , PubMed 22798656 )

* These data were automatically processed and therefore are not curated

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