Name: Chryseobacterium rigui CJ16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133832

Type strain:

Species: Chryseobacterium rigui

Strain Designation: CJ16

Culture col. no.: KACC 16560, JCM 18078

Strain history: C.-J. Cha CJ16.

NCBI tax ID(s): 1132696 (species)

Section

Chryseobacterium rigui CJ16 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from estuarine water.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium rigui**
	Full Scientific Name (LPSN)	Chryseobacterium rigui Park et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30625]	Gram stain	negative

[Ref.: #30625]	Cell length	2 µm

[Ref.: #30625]	Cell width	0.65 µm

[Ref.: #30625]	Cell shape	rod-shaped

[Ref.: #30625]	Motility	no

[Ref.: #30625]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30625]	growth	05-37 °C
[Ref.: #30625]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30625]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30625]			optimum	6
[Ref.: #30625]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30625]

Oxygen tolerance

aerobe

[Ref.: #30625]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30625]		NaCl		growth	0-3	%

[Ref.: #30625]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30625]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #30625]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30625]	acetate ChEBI	+	carbon source
[Ref.: #30625]	alanine ChEBI	+	carbon source
[Ref.: #30625]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30625]	arabinose ChEBI	+	carbon source
[Ref.: #30625]	asparagine ChEBI	+	carbon source
[Ref.: #30625]	aspartate ChEBI	+	carbon source
[Ref.: #30625]	cellobiose ChEBI	+	carbon source
[Ref.: #30625]	dextrin ChEBI	+	carbon source
[Ref.: #30625]	esculin ChEBI	+	hydrolysis
[Ref.: #30625]	fructose ChEBI	+	carbon source
[Ref.: #30625]	glucose ChEBI	+	carbon source
[Ref.: #30625]	glutamate ChEBI	+	carbon source
[Ref.: #30625]	glycine ChEBI	+	carbon source
[Ref.: #30625]	glycogen ChEBI	+	carbon source
[Ref.: #30625]	inosine ChEBI	+	carbon source
[Ref.: #30625]	maltose ChEBI	+	carbon source
[Ref.: #30625]	mannose ChEBI	+	carbon source
[Ref.: #30625]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30625]	phenylalanine ChEBI	+	carbon source
[Ref.: #30625]	proline ChEBI	+	carbon source
[Ref.: #30625]	propionate ChEBI	+	carbon source
[Ref.: #30625]	serine ChEBI	+	carbon source
[Ref.: #30625]	succinate ChEBI	+	carbon source
[Ref.: #30625]	sucrose ChEBI	+	carbon source
[Ref.: #30625]	threonine ChEBI	+	carbon source
[Ref.: #30625]	thymidine ChEBI	+	carbon source
[Ref.: #30625]	tween 40 ChEBI	+	carbon source
[Ref.: #30625]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30625]	acid phosphatase	+	3.1.3.2
[Ref.: #30625]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30625]	catalase	+	1.11.1.6
[Ref.: #30625]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30625]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30625]	Sample type/isolated from	estuarine water

[Ref.: #67770]	Sample type/isolated from	Sediment of estuarine wetland of Han River
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Estuary

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ071497 (>99% sequence identity) for Chryseobacterium rigui subclade from Microbeatlas

Aquatic Samples	52
Soil Samples	30
Animal Samples	328
Plant Samples	140
Total Samples	550

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30625]	Chryseobacterium rigui strain CJ16 16S ribosomal RNA gene, partial sequence	JQ071497	1439	GenBank	1132696 tax ID

[Ref.: #30625]	GC-content	37.9 mol%
[Ref.: #67770]	GC-content	37.9 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30625]

Culture collection no.

KACC 16560, JCM 18078

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium reticulitermitis sp. nov., isolated from the gut of Reticulitermes aculabialis.	Zhao Y, Wang Y, Li DH, Deng Y, Yang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001848	2017	*
Phylogeny	Chryseobacterium rigui sp. nov., isolated from an estuarine wetland.	Park SJ, Choi JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.040519-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30625

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26956 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26956

IJSEM 1062 2013 ( DOI 10.1099/ijs.0.040519-0 , PubMed 22707535 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium rigui in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF