Name: Algimonas porphyrae 0C-2-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133831

Type strain:

Species: Algimonas porphyrae

Strain Designation: 0C-2-2

Culture col. no.: LMG 26424, NBRC 108216

NCBI tax ID(s): 1128113 (species)

SI-ID 377385

LMG 26424, NBRC 108216

Section

Algimonas porphyrae 0C-2-2 is an aerobe, Gram-negative, motile bacterium that was isolated from red alga Porphyra yezoensis.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Hyphomonadaceae*
	Genus	*Algimonas*
	Species	**Algimonas porphyrae**
	Full Scientific Name (LPSN)	Algimonas porphyrae Fukui et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30623]	Gram stain	negative

[Ref.: #30623]	Cell length	2.13 µm

[Ref.: #30623]	Cell width	0.37 µm

[Ref.: #30623]	Cell shape	rod-shaped

[Ref.: #30623]	Motility	yes

[Ref.: #30623]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30623]			growth	10-30 °C
[Ref.: #30623]			optimum	20 °C

[Ref.: #30623]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #30623]			optimum	7.5
[Ref.: #30623]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30623]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30623]		NaCl		growth	01-05	%
[Ref.: #30623]		NaCl		optimum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30623]	citrate ChEBI	+	carbon source
[Ref.: #30623]	esculin ChEBI	+	hydrolysis
[Ref.: #30623]	galactose ChEBI	+	carbon source
[Ref.: #30623]	glucose ChEBI	+	carbon source
[Ref.: #30623]	maltose ChEBI	+	carbon source
[Ref.: #30623]	mannose ChEBI	+	carbon source
[Ref.: #30623]	nitrate ChEBI	+	reduction
[Ref.: #30623]	tween 20 ChEBI	+	carbon source
[Ref.: #30623]	tween 40 ChEBI	+	carbon source
[Ref.: #30623]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30623]	acid phosphatase	+	3.1.3.2
[Ref.: #30623]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30623]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30623]	Sample type/isolated from	red alga Porphyra yezoensis
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB689189 (>99% sequence identity) for Algimonas porphyrae subclade from Microbeatlas

Aquatic Samples	79
Soil Samples
Animal Samples	2
Plant Samples
Total Samples	81

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30623]	Algimonas porphyrae gene for 16S ribosomal RNA, partial sequence, strain: 0C-2-2	AB689189	1331	GenBank	1128113 tax ID

[Ref.: #30623]

GC-content

58.5 mol%

Availability in culture collections External links

[Ref.: #30623]

Culture collection no.

LMG 26424, NBRC 108216

[Ref.: #91612]

SI-ID 377385

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algimonas ampicilliniresistens sp. nov., isolated from the red alga Porphyra yezoensis, and emended description of the genus Algimonas.	Fukui Y, Kobayashi M, Saito H, Oikawa H, Yano Y, Satomi M	Int J Syst Evol Microbiol	10.1099/ijs.0.053405-0	2013	*
Phylogeny	Algimonas porphyrae gen. nov., sp. nov., a member of the family Hyphomonadaceae, isolated from the red alga Porphyra yezoensis.	Fukui Y, Abe M, Kobayashi M, Saito H, Oikawa H, Yano Y, Satomi M	Int J Syst Evol Microbiol	10.1099/ijs.0.040485-0	2012	*
Phylogeny	Algimonas arctica sp. nov., isolated from intertidal sand, and emended description of the genus Algimonas.	Liu C, Zhang XY, Song XY, Su HN, Qin QL, Xie BB, Chen XL, Zhang YZ, Shi M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000402	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30623

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26954 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91612

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377385.1 )

#26954

IJSEM 314 2013 ( DOI 10.1099/ijs.0.040485-0 , PubMed 22427444 )

* These data were automatically processed and therefore are not curated

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