Name: Chryseobacterium taihuense THMBM1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133828

Type strain:

Species: Chryseobacterium taihuense

Strain Designation: THMBM1

Culture col. no.: CGMCC 1.10941, NBRC 108747

NCBI tax ID(s): 1141221 (species)

Section

Chryseobacterium taihuense THMBM1 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from decomposing algal scum.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium taihuense**
	Full Scientific Name (LPSN)	Chryseobacterium taihuense Wu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30620]	Gram stain	negative

[Ref.: #30620]	Cell length	1.5 µm

[Ref.: #30620]	Cell width	0.5 µm

[Ref.: #30620]	Cell shape	rod-shaped

[Ref.: #30620]	Motility	no

[Ref.: #30620]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30620]			growth	15-45 °C
[Ref.: #30620]			optimum	33.5 °C

[Ref.: #30620]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30620]			optimum	8
[Ref.: #30620]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30620]

Oxygen tolerance

facultative anaerobe

[Ref.: #30620]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30620]		NaCl		growth	0-4	%
[Ref.: #30620]		NaCl		optimum	0.5	%

[Ref.: #30620]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30620]	decanoate ChEBI	+	carbon source
[Ref.: #30620]	esculin ChEBI	+	hydrolysis
[Ref.: #30620]	gluconate ChEBI	+	carbon source
[Ref.: #30620]	glucose ChEBI	+	carbon source
[Ref.: #30620]	malate ChEBI	+	carbon source
[Ref.: #30620]	maltose ChEBI	+	carbon source
[Ref.: #30620]	mannitol ChEBI	+	carbon source
[Ref.: #30620]	mannose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30620]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30620]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #30620]	acid phosphatase	+	3.1.3.2
[Ref.: #30620]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30620]	catalase	+	1.11.1.6
[Ref.: #30620]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30620]	gelatinase	+
[Ref.: #30620]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30620]	Sample type/isolated from	decomposing algal scum
* marker position based on {}

Isolation sources categories

#Host

#Algae

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30620]	Chryseobacterium taihuense strain THMBM1 16S ribosomal RNA gene, partial sequence	JQ283114	1478	GenBank	1141221 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium taihuense CGMCC 1.10941	GCA_900103755	scaffold	GenBank	1141221 tax ID	*
[Ref.: #66792]	Chryseobacterium taihuense strain CGMCC 1.10941	1141221.4	wgs	PATRIC	1141221 tax ID	*
[Ref.: #66792]	Chryseobacterium taihuense CGMCC 1.10941	2663762742	draft	JGI IMG/M	1141221 tax ID	*

[Ref.: #30620]

GC-content

36.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium taihuense CGMCC 1.10941 NCBI: GCA_900103755.1
[Ref.: #69480]	motile	no	91.592	no
[Ref.: #69480]	flagellated	no	96.314	no
[Ref.: #69480]	gram-positive	no	98.434	yes
[Ref.: #69480]	anaerobic	no	99.139	yes
[Ref.: #69480]	aerobic	yes	86.908	yes
[Ref.: #69480]	halophile	no	93.338	no
[Ref.: #69480]	spore-forming	no	94.956	yes
[Ref.: #69480]	glucose-ferment	no	93.292	no
[Ref.: #69480]	thermophile	no	98.941	yes
[Ref.: #69480]	glucose-util	yes	84.971	yes

Availability in culture collections External links

[Ref.: #30620]

Culture collection no.

CGMCC 1.10941, NBRC 108747

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium lineare sp. nov., isolated from a limpid stream.	Zhao Z, Tu YQ, Shen X, Han SB, Zhang CY, Sun C, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001629	2017	*
Phylogeny	Chryseobacterium taihuense sp. nov., isolated from a eutrophic lake, and emended descriptions of the genus Chryseobacterium, Chryseobacterium taiwanense, Chryseobacterium jejuense and Chryseobacterium indoltheticum.	Wu YF, Wu QL, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.040337-0	2012	*
Phylogeny	Chryseobacterium echinoideorum sp. nov., isolated from sea urchins (Tripneustes gratilla).	Lin SY, Hameed A, Wen CZ, Liu YC, Shen FT, Hsu YH, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000524	2015	*
Phylogeny	Chryseobacterium oryzae sp. nov. and Chryseobacterium suipulveris sp. nov., isolated from Andong sikhye and pigpen dust, respectively.	Heo J, Won M, Lee D, Kim JS, Han BH, Kim SJ, Hong SB, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.005532	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30620

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26951 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26951

IJSEM 913 2013 ( DOI 10.1099/ijs.0.040337-0 , PubMed 22634705 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium taihuense CGMCC 1.10941

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