Pontibacter saemangeumensis (KACC 16448, JCM 17926, GCM0142)

Name: Pontibacter saemangeumensis (KACC 16448, JCM 17926, GCM0142)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133824

Type strain

Strain Designation GCM0142

Culture col. no. KACC 16448 JCM 17926 GCM0142

NCBI tax ID(s) 1084525

Special Collections JCM Literature strains

Links

Pontibacter saemangeumensis GCM0142 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132535

JCM 17926

@ref 20215

Last LPSN update 2025-12-16 10:01:53

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Pontibacter

Species Pontibacter saemangeumensis

Full scientific name Pontibacter saemangeumensis Kang et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30608	negative	1.4 µm	0.7 µm	rod-shaped

Pigmentation

30608

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30608	positive	growth	05-30
30608	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30608	positive	optimum	7
30608	positive	growth	06-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

30608

Oxygen toleranceaerobe

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30608	30089 ChEBI	acetate	+	carbon source
30608	22599 ChEBI	arabinose	+	carbon source
30608	22653 ChEBI	asparagine	+	carbon source
30608	35391 ChEBI	aspartate	+	carbon source
30608	17057 ChEBI	cellobiose	+	carbon source
30608	23652 ChEBI	dextrin	+	carbon source
30608	4853 ChEBI	esculin	+	hydrolysis
30608	28757 ChEBI	fructose	+	carbon source
30608	28260 ChEBI	galactose	+	carbon source
30608	24265 ChEBI	gluconate	+	carbon source
30608	17234 ChEBI	glucose	+	carbon source
30608	29987 ChEBI	glutamate	+	carbon source
30608	28087 ChEBI	glycogen	+	carbon source
30608	18403 ChEBI	L-arabitol	+	carbon source
30608	24996 ChEBI	lactate	+	carbon source
30608	17716 ChEBI	lactose	+	carbon source
30608	17306 ChEBI	maltose	+	carbon source
30608	37684 ChEBI	mannose	+	carbon source
30608	28053 ChEBI	melibiose	+	carbon source
30608	37657 ChEBI	methyl D-glucoside	+	carbon source
30608	506227 ChEBI	N-acetylglucosamine	+	carbon source
30608	16634 ChEBI	raffinose	+	carbon source
30608	30911 ChEBI	sorbitol	+	carbon source
30608	30031 ChEBI	succinate	+	carbon source
30608	17992 ChEBI	sucrose	+	carbon source
30608	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30608	catalase	+	1.11.1.6
30608	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
30608	seawater
67770	Confined seawater in the Saemangeum Tide Embankment	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JN607163 (>99% sequence identity) for Pontibacter saemangeumensis subclade from Microbeatlas

Aquatic Samples	6
Soil Samples	23
Animal Samples	2
Plant Samples
Total Samples	31

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954189v1 assembly for Pontibacter saemangeumensis JCM 17926	scaffold	GCA_039541895	1084525	47.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30608	Pontibacter saemangeumensis strain GCM0142 16S ribosomal RNA gene, partial sequence	JN607163	1372		1084525

GC content

@ref	GC-content (mol%)	Method
30608	48.9
67770	48.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacter humi sp. nov., isolated from mountain soil.	Srinivasan S, Lee JJ, Lee SS, Kim MK	Curr Microbiol	10.1007/s00284-014-0580-1	2014
Phylogeny	Pontibacter terrae sp. nov., isolated from soil.	Kim DU, Kim JY, Jang JH, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002964	2018
Phylogeny	Pontibacter saemangeumensis sp. nov., isolated from seawater.	Kang JY, Joung Y, Chun J, Kim H, Joh K, Jahng KY	Int J Syst Evol Microbiol	10.1099/ijs.0.039867-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30608	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26939 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pontibacter saemangeumensis (KACC 16448, JCM 17926, GCM0142)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039541895

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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