Name: Pontixanthobacter gangjinensis KJ7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133814

Type strain:

Species: Pontixanthobacter gangjinensis

Strain Designation: KJ7

Culture col. no.: KACC 16190, JCM 17802

Strain history: C. O. Jeon KJ7.

NCBI tax ID(s): 1028742 (species)

Section

Pontixanthobacter gangjinensis KJ7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from tidal flat.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Pontixanthobacter*
	Species	**Pontixanthobacter gangjinensis**
	Full Scientific Name (LPSN)	Pontixanthobacter gangjinensis (Jeong et al. 2013) Xu et al. 2020

Synonym

Altererythrobacter gangjinensis

Information on morphological and physiological properties Morphology

[Ref.: #30572]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.915

[Ref.: #30572]	Cell length	2.15 µm

[Ref.: #30572]	Cell width	0.6 µm

[Ref.: #30572]	Cell shape	rod-shaped

[Ref.: #30572]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.697

[Ref.: #30572]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30572]	growth	05-35 °C
[Ref.: #30572]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #30572]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30572]			optimum	6.75
[Ref.: #30572]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30572]

Oxygen tolerance

aerobe

[Ref.: #30572]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30572]		NaCl		growth	0-9	%
[Ref.: #30572]		NaCl		optimum	2	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30572]	esculin ChEBI	+	hydrolysis
[Ref.: #30572]	glucose ChEBI	+	carbon source
[Ref.: #30572]	mannitol ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30572]	acid phosphatase	+	3.1.3.2
[Ref.: #30572]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30572]	catalase	+	1.11.1.6
[Ref.: #30572]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30572]	Sample type/isolated from	tidal flat

[Ref.: #67770]	Sample type/isolated from	Tidal flat of the Gangjin bay
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30572]	UNVERIFIED: Altererythrobacter gangjinensis strain KJ7 16S ribosomal RNA gene, partial sequence	JF751048	1455	GenBank	1028742 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pontixanthobacter gangjinensis JCM 17802	GCA_009827545	scaffold	GenBank	1028742 tax ID
[Ref.: #66792]	Altererythrobacter gangjinensis strain JCM 17802	1028742.5	wgs	PATRIC	1028742 tax ID	*

[Ref.: #30572]	GC-content	60.2 mol%
[Ref.: #67770]	GC-content	55.5 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	60.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pontixanthobacter gangjinensis JCM 17802 NCBI: GCA_009827545.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Altererythrobacter gangjinensis strain JCM 17802 PATRIC: 1028742.5
[Ref.: #69480]	motile	no	88.063	yes
[Ref.: #69480]	flagellated	no	96.365	yes
[Ref.: #69480]	gram-positive	no	97.884	no
[Ref.: #69480]	anaerobic	no	98.994	no
[Ref.: #69480]	aerobic	yes	88.796	yes
[Ref.: #69480]	halophile	no	78.309	no
[Ref.: #69480]	spore-forming	no	95.128	yes
[Ref.: #69480]	thermophile	no	98.113	yes
[Ref.: #69480]	glucose-util	yes	88.494	yes
[Ref.: #69480]	glucose-ferment	no	91.45	no

Availability in culture collections External links

[Ref.: #30572]

Culture collection no.

KACC 16190, JCM 17802

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30572

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26903 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26903

IJSEM 971 2013 ( DOI 10.1099/ijs.0.039024-0 , PubMed 22685101 )

* These data were automatically processed and therefore are not curated

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Pontixanthobacter gangjinensis JCM 17802

Altererythrobacter gangjinensis strain JCM 17802

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