Name: Magnetococcus marinus MC-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133811

Type strain:

Species: Magnetococcus marinus

Strain Designation: MC-1

Culture col. no.: ATCC BAA-1437, JCM 17883

Strain history: C. T. Lefèvre <-- D. A. Bazylinski MC-1.

NCBI tax ID(s): 1124597 (species)

Section

Magnetococcus marinus MC-1 is a microaerophile, Gram-negative, motile bacterium that was isolated from estuarine water.

coccus-shaped
Gram-negative
motile
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Magnetococcales*
	Family	*Magnetococcaceae*
	Genus	*Magnetococcus*
	Species	**Magnetococcus marinus**
	Full Scientific Name (LPSN)	Magnetococcus marinus Bazylinski et al. 2013

Synonym

"Candidatus Magnetococcus marinus"

Information on morphological and physiological properties Morphology

[Ref.: #30567]	Gram stain	negative

[Ref.: #30567]	Cell shape	coccus-shaped

[Ref.: #30567]	Motility	yes

[Ref.: #30567]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30567]	growth	05-35 °C
[Ref.: #30567]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #30567]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30567]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30567]

Oxygen tolerance

microaerophile

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30567]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30567]	Sample type/isolated from	estuarine water

[Ref.: #67770]	Sample type/isolated from	Oxic-anoxic transition zone in the Pettasquamscutt estuary in Narragansett Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rhode Island
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Estuary

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence CP000471 (>99% sequence identity) for Magnetococcus marinus subclade from Microbeatlas

Aquatic Samples	371
Soil Samples	103
Animal Samples	231
Plant Samples	20
Total Samples	725

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Magnetococcus marinus strain MC-1 16S ribosomal RNA, partial sequence	NR_074371.1	1496	ENA	156889 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Magnetococcus marinus MC-1	GCA_000014865	complete	GenBank	156889 tax ID	*
[Ref.: #66792]	Magnetococcus marinus MC-1	156889.10	complete	PATRIC	156889 tax ID	*
[Ref.: #66792]	Magnetococcus marinus MC-1	639633036	complete	JGI IMG/M	156889 tax ID	*

[Ref.: #30567]	GC-content	54.2 mol%
[Ref.: #67770]	GC-content	55.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	54.17 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Magnetococcus marinus MC-1 MC-1 NCBI: GCA_000014865.1
[Ref.: #69480]	motile	yes	85.978	no
[Ref.: #69480]	flagellated	no	50.512	no
[Ref.: #69480]	gram-positive	no	99.445	no
[Ref.: #69480]	anaerobic	no	73.381	yes
[Ref.: #69480]	halophile	no	87.348	no
[Ref.: #69480]	spore-forming	no	91.966	no
[Ref.: #69480]	thermophile	no	90.686	yes
[Ref.: #69480]	glucose-util	no	67.796	no
[Ref.: #69480]	aerobic	no	94.423	no
[Ref.: #69480]	glucose-ferment	no	88.8	no

Availability in culture collections External links

[Ref.: #30567]

Culture collection no.

ATCC BAA-1437, JCM 17883

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Reactive oxygen species (ROS) production in HepG2 cancer cell line through the application of localized alternating magnetic field.	Sola-Leyva A, Jabalera Y, Chico-Lozano MA, Carrasco-Jimenez MP, Iglesias GR, Jimenez-Lopez C	J Mater Chem B	10.1039/d0tb01306d	2020	*
Metabolism	Light-driven carbon-carbon bond formation via CO2 reduction catalyzed by complexes of CdS nanorods and a 2-oxoacid oxidoreductase.	Hamby H, Li B, Shinopoulos KE, Keller HR, Elliott SJ, Dukovic G	Proc Natl Acad Sci U S A	10.1073/pnas.1903948116	2019	*
Metabolism	Tuning properties of biomimetic magnetic nanoparticles by combining magnetosome associated proteins.	Peigneux A, Jabalera Y, Vivas MAF, Casares S, Azuaga AI, Jimenez-Lopez C	Sci Rep	10.1038/s41598-019-45219-7	2019	*
Enzymology	A reverse TCA cycle 2-oxoacid:ferredoxin oxidoreductase that makes C-C bonds from CO2.	Chen PY, Li B, Drennan CL, Elliott SJ	Joule	10.1016/j.joule.2018.12.006	2019	*
Pathogenicity	pH-Dependent Adsorption Release of Doxorubicin on MamC-Biomimetic Magnetite Nanoparticles.	Garcia Rubia G, Peigneux A, Jabalera Y, Puerma J, Oltolina F, Elert K, Colangelo D, Gomez Morales J, Prat M, Jimenez-Lopez C	Langmuir	10.1021/acs.langmuir.8b03109	2018	*
Phylogeny	The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.	Ji B, Zhang SD, Zhang WJ, Rouy Z, Alberto F, Santini CL, Mangenot S, Gagnot S, Philippe N, Pradel N, Zhang L, Tempel S, Li Y, Medigue C, Henrissat B, Coutinho PM, Barbe V, Talla E, Wu LF	Environ Microbiol	10.1111/1462-2920.13637	2017	*
Metabolism	Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment.	Araujo AC, Morillo V, Cypriano J, Teixeira LC, Leao P, Lyra S, Almeida LG, Bazylinski DA, Ribeiro de Vasconcelos AT, Abreu F, Lins U	BMC Genomics	10.1186/s12864-016-3064-9	2016	*
Pathogenicity	Magneto-aerotactic bacteria deliver drug-containing nanoliposomes to tumour hypoxic regions.	Felfoul O, Mohammadi M, Taherkhani S, de Lanauze D, Zhong Xu Y, Loghin D, Essa S, Jancik S, Houle D, Lafleur M, Gaboury L, Tabrizian M, Kaou N, Atkin M, Vuong T, Batist G, Beauchemin N, Radzioch D, Martel S	Nat Nanotechnol	10.1038/nnano.2016.137	2016	*
Metabolism	Size control of in vitro synthesized magnetite crystals by the MamC protein of Magnetococcus marinus strain MC-1.	Valverde-Tercedor C, Montalban-Lopez M, Perez-Gonzalez T, Sanchez-Quesada MS, Prozorov T, Pineda-Molina E, Fernandez-Vivas MA, Rodriguez-Navarro AB, Trubitsyn D, Bazylinski DA, Jimenez-Lopez C	Appl Microbiol Biotechnol	10.1007/s00253-014-6326-y	2015	*
Metabolism	Subcellular localization of the magnetosome protein MamC in the marine magnetotactic bacterium Magnetococcus marinus strain MC-1 using immunoelectron microscopy.	Valverde-Tercedor C, Abadia-Molina F, Martinez-Bueno M, Pineda-Molina E, Chen L, Oestreicher Z, Lower BH, Lower SK, Bazylinski DA, Jimenez-Lopez C	Arch Microbiol	10.1007/s00203-014-0984-0	2014	*
Metabolism	Covalent binding of nanoliposomes to the surface of magnetotactic bacteria for the synthesis of self-propelled therapeutic agents.	Taherkhani S, Mohammadi M, Daoud J, Martel S, Tabrizian M	ACS Nano	10.1021/nn5011304	2014	*
Phylogeny	Isolation, cultivation and genomic analysis of magnetosome biomineralization genes of a new genus of South-seeking magnetotactic cocci within the Alphaproteobacteria.	Morillo V, Abreu F, Araujo AC, de Almeida LG, Enrich-Prast A, Farina M, de Vasconcelos AT, Bazylinski DA, Lins U	Front Microbiol	10.3389/fmicb.2014.00072	2014	*
Phylogeny	Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria.	Bazylinski DA, Williams TJ, Lefevre CT, Berg RJ, Zhang CL, Bowser SS, Dean AJ, Beveridge TJ	Int J Syst Evol Microbiol	10.1099/ijs.0.038927-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30567

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26898 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26898

IJSEM 801 2013 ( DOI 10.1099/ijs.0.038927-0 , PubMed 22581902 )

* These data were automatically processed and therefore are not curated

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Magnetococcus marinus MC-1 MC-1

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