Name: Kordiimonas aquimaris KCCM 42940
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133810

Type strain:

Species: Kordiimonas aquimaris

Culture col. no.: KCCM 42940, JCM 16665, MEBiC 06554

Strain history: K. K. Kwon MEBiC06554.

NCBI tax ID(s): 707591 (species)

Section

Kordiimonas aquimaris KCCM 42940 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Kordiimonadales*
	Family	*Temperatibacteraceae*
	Genus	*Kordiimonas*
	Species	**Kordiimonas aquimaris**
	Full Scientific Name (LPSN)	Kordiimonas aquimaris Yang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30566]	Gram stain	negative

[Ref.: #30566]	Cell length	0.95 µm

[Ref.: #30566]	Cell width	0.75 µm

[Ref.: #30566]	Cell shape	rod-shaped

[Ref.: #30566]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30566]	growth	10.5-35 °C
[Ref.: #30566]	optimum	20 °C
[Ref.: #67770]	growth	20 °C

[Ref.: #30566]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #30566]			optimum	7
[Ref.: #30566]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30566]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30566]		NaCl		growth	0-13	%
[Ref.: #30566]		NaCl		optimum	3.25	%

[Ref.: #30566]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30566]	alanine ChEBI	+	carbon source
[Ref.: #30566]	arabinose ChEBI	+	carbon source
[Ref.: #30566]	asparagine ChEBI	+	carbon source
[Ref.: #30566]	aspartate ChEBI	+	carbon source
[Ref.: #30566]	cellobiose ChEBI	+	carbon source
[Ref.: #30566]	citrate ChEBI	+	carbon source
[Ref.: #30566]	fructose ChEBI	+	carbon source
[Ref.: #30566]	galactose ChEBI	+	carbon source
[Ref.: #30566]	galacturonate ChEBI	+	carbon source
[Ref.: #30566]	gluconate ChEBI	+	carbon source
[Ref.: #30566]	glucose ChEBI	+	carbon source
[Ref.: #30566]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30566]	lactose ChEBI	+	carbon source
[Ref.: #30566]	maltose ChEBI	+	carbon source
[Ref.: #30566]	mannitol ChEBI	+	carbon source
[Ref.: #30566]	mannose ChEBI	+	carbon source
[Ref.: #30566]	melibiose ChEBI	+	carbon source
[Ref.: #30566]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30566]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30566]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30566]	ornithine ChEBI	+	carbon source
[Ref.: #30566]	phenylalanine ChEBI	+	carbon source
[Ref.: #30566]	proline ChEBI	+	carbon source
[Ref.: #30566]	propionate ChEBI	+	carbon source
[Ref.: #30566]	quinate ChEBI	+	carbon source
[Ref.: #30566]	succinate ChEBI	+	carbon source
[Ref.: #30566]	sucrose ChEBI	+	carbon source
[Ref.: #30566]	trehalose ChEBI	+	carbon source
[Ref.: #30566]	tween 40 ChEBI	+	carbon source
[Ref.: #30566]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30566]	acid phosphatase	+	3.1.3.2
[Ref.: #30566]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30566]	catalase	+	1.11.1.6
[Ref.: #30566]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30566]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU289640 (>99% sequence identity) for Kordiimonas aquimaris subclade from Microbeatlas

Aquatic Samples	108
Soil Samples	16
Animal Samples	3
Plant Samples
Total Samples	127

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30566]	Kordiimonas aquimaris strain MEBiC06554 16S ribosomal RNA gene, partial sequence	GU289640	1455	GenBank	707591 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kordiimonas aquimaris JCM 16665	GCA_025574485	scaffold	GenBank	707591 tax ID	*

[Ref.: #30566]	GC-content	50.3 mol%
[Ref.: #67770]	GC-content	50.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kordiimonas aquimaris JCM 16665 NCBI: GCA_025574485.1
[Ref.: #69480]	motile	yes	87.65	yes
[Ref.: #69480]	flagellated	yes	56.78	no
[Ref.: #69480]	gram-positive	no	98.08	yes
[Ref.: #69480]	anaerobic	no	99.401	yes
[Ref.: #69480]	aerobic	yes	94.379	yes
[Ref.: #69480]	halophile	no	60.397	no
[Ref.: #69480]	spore-forming	no	95.004	no
[Ref.: #69480]	glucose-ferment	no	91.556	no
[Ref.: #69480]	thermophile	no	96.238	no
[Ref.: #69480]	glucose-util	yes	83.293	yes

Availability in culture collections External links

[Ref.: #30566]

Culture collection no.

KCCM 42940, JCM 16665, MEBiC 06554

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kordiimonas sediminis sp. nov., isolated from a sea cucumber culture pond.	Zhang HX, Zhao JX, Chen GJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0671-z	2016	*
Phylogeny	Description of Kordiimonas aquimaris sp. nov., isolated from seawater, and emended descriptions of the genus Kordiimonas Kwon et al. 2005 emend. Xu et al. 2011 and of its existing species.	Yang SH, Kim MR, Seo HS, Lee SH, Lee JH, Kim SJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijs.0.038893-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30566

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26897 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26897

IJSEM 298 2013 ( DOI 10.1099/ijs.0.038893-0 , PubMed 22427451 )

* These data were automatically processed and therefore are not curated

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Kordiimonas aquimaris JCM 16665

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