Name: Tsuneonella troitsensis KCTC 12303
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133807

Type strain:

Species: Tsuneonella troitsensis

Culture col. no.: KCTC 12303, JCM 17037, KMM 6042

Strain history: S. B. Kim KMM 6042.

NCBI tax ID(s): 292222 (species)

Section

Tsuneonella troitsensis KCTC 12303 is an aerobe, Gram-negative, motile bacterium that was isolated from sea urchin.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Tsuneonella*
	Species	**Tsuneonella troitsensis**
	Full Scientific Name (LPSN)	Tsuneonella troitsensis (Nedashkovskaya et al. 2013) Xu et al. 2020

Synonym

Altererythrobacter troitsensis

Information on morphological and physiological properties Morphology

[Ref.: #30562]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.981

[Ref.: #30562]	Cell length	0.9 µm

[Ref.: #30562]	Cell width	0.4 µm

[Ref.: #30562]	Cell shape	rod-shaped

[Ref.: #30562]	Motility	yes

[Ref.: #30562]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30562]	growth	04-39 °C
[Ref.: #30562]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #30562]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30562]			optimum	7.4
[Ref.: #30562]			growth	5.8-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30562]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.926

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30562]		NaCl		growth	0-4	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30562]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #30562]	acetate ChEBI	+	carbon source
[Ref.: #30562]	arabinose ChEBI	+	carbon source
[Ref.: #30562]	esculin ChEBI	+	hydrolysis
[Ref.: #30562]	glucose ChEBI	+	carbon source
[Ref.: #30562]	lactate ChEBI	+	carbon source
[Ref.: #30562]	leucine ChEBI	+	carbon source
[Ref.: #30562]	maltose ChEBI	+	carbon source
[Ref.: #30562]	mannitol ChEBI	+	carbon source
[Ref.: #30562]	nitrate ChEBI	+	reduction
[Ref.: #30562]	propionate ChEBI	+	carbon source
[Ref.: #30562]	suberic acid ChEBI	+	carbon source
[Ref.: #30562]	sucrose ChEBI	+	carbon source
[Ref.: #30562]	tween 20 ChEBI	+	carbon source
[Ref.: #30562]	tween 40 ChEBI	+	carbon source
[Ref.: #30562]	tween 80 ChEBI	+	carbon source
[Ref.: #30562]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30562]	acid phosphatase	+	3.1.3.2
[Ref.: #30562]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30562]	catalase	+	1.11.1.6
[Ref.: #30562]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30562]	Sample type/isolated from	sea urchin

[Ref.: #67770]	Sample type/isolated from	Sea urchin Strongylocentrotus intermedius
[Ref.: #67770]	Host species	Strongylocentrotus intermedius
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY676115 (>99% sequence identity) for Tsuneonella troitsensis from Microbeatlas

Aquatic Samples	173
Soil Samples	29
Animal Samples	22
Plant Samples	2
Total Samples	226

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30562]	Altererythrobacter troitsensis strain KMM 6042 16S ribosomal RNA gene, partial sequence	AY676115	1389	GenBank	292222 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tsuneonella troitsensis JCM 17037	GCA_001441535	contig	GenBank	292222 tax ID
[Ref.: #67770]	Tsuneonella troitsensis KMM 6042	GCA_003730315	contig	GenBank	292222 tax ID
[Ref.: #66792]	Altererythrobacter troitsensis strain JCM17037	292222.4	wgs	PATRIC	292222 tax ID	*
[Ref.: #66792]	Altererythrobacter troitsensis strain KMM 6042	292222.6	wgs	PATRIC	292222 tax ID	*
[Ref.: #66792]	Altererythrobacter troitsensis JCM 17037	2744054484	draft	JGI IMG/M	292222 tax ID	*
[Ref.: #66792]	Altererythrobacter troitsensis KMM 6042	2839207979	draft	JGI IMG/M	292222 tax ID	*

[Ref.: #30562]	GC-content	65 mol%
[Ref.: #67770]	GC-content	65 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	64.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Altererythrobacter troitsensis strain KMM 6042 PATRIC: 292222.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Altererythrobacter troitsensis strain JCM17037 PATRIC: 292222.4
[Ref.: #69480]	gram-positive	no	97.699	yes
[Ref.: #69480]	anaerobic	no	99.506	yes
[Ref.: #69480]	halophile	no	93.481	no
[Ref.: #69480]	spore-forming	no	95.406	no
[Ref.: #69480]	glucose-util	yes	86.489	yes
[Ref.: #69480]	motile	no	86.879	yes
[Ref.: #69480]	flagellated	no	97.568	no
[Ref.: #69480]	aerobic	yes	93.835	yes
[Ref.: #69480]	thermophile	no	96.763	yes
[Ref.: #69480]	glucose-ferment	no	91.038	no

Availability in culture collections External links

[Ref.: #30562]

Culture collection no.

KCTC 12303, JCM 17037, KMM 6042

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30562

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26893 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26893

IJSEM 93 2013 ( DOI 10.1099/ijs.0.038836-0 , PubMed 22345135 )

* These data were automatically processed and therefore are not curated

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Altererythrobacter troitsensis strain KMM 6042

Altererythrobacter troitsensis strain JCM17037

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