Kaistia defluvii (KCTC 23766, JCM 18034, B6-12)

Name: Kaistia defluvii (KCTC 23766, JCM 18034, B6-12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133806

Type strain

Strain Designation B6-12

Culture col. no. KCTC 23766 JCM 18034 B6-12

NCBI tax ID(s) 410841

Special Collections JCM KCTC Literature strains

History JCM <-- L. Jin B6-12. KCTC <- L Jin, KRIBB

Links

Kaistia defluvii B6-12 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater sediment .

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27324

KCTC 23766,JCM 18034

@ref 20215

Last LPSN update 2026-05-29 08:38:11

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Kaistiaceae

Genus Kaistia

Species Kaistia defluvii

Full scientific name Kaistia defluvii Jin et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30558	negative	1.5 µm	0.65 µm	rod-shaped
67771	negative
125438	negative				98.486

Pigmentation

30558

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30558	positive	growth	10-30
30558	positive	optimum	29
67770	positive	growth	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
30558	positive	optimum	7.5
30558	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30558	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30558	NaCl	positive	growth	0-1 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30558	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
30558	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
30558	22599 ChEBI	arabinose	+	carbon source
30558	4853 ChEBI	esculin	+	hydrolysis
30558	33984 ChEBI	fucose	+	carbon source
30558	17234 ChEBI	glucose	+	carbon source
30558	24996 ChEBI	lactate	+	carbon source
30558	17306 ChEBI	maltose	+	carbon source
30558	29864 ChEBI	mannitol	+	carbon source
30558	37684 ChEBI	mannose	+	carbon source
30558	28053 ChEBI	melibiose	+	carbon source
30558	506227 ChEBI	N-acetylglucosamine	+	carbon source
30558	17632 ChEBI	nitrate	+	reduction
30558	18401 ChEBI	phenylacetate	+	carbon source
30558	26546 ChEBI	rhamnose	+	carbon source
30558	33942 ChEBI	ribose	+	carbon source
30558	17814 ChEBI	salicin	+	carbon source
30558	30911 ChEBI	sorbitol	+	carbon source
30558	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30558	catalase	+	1.11.1.6
30558	cytochrome oxidase	+	1.9.3.1
30558	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
30558	freshwater sediment (river, lake, pond)
67770	Sediment collected from the River Geumho		Republic of Korea	KOR	Asia
67771	From sediment	Daegu	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM409365 (>99% sequence identity) for Kaistia from Microbeatlas

Aquatic Samples	825
Soil Samples	656
Animal Samples	306
Plant Samples	131
Total Samples	1918

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2634395v1 assembly for Kaistia defluvii JCM 18034	contig	GCA_026343955	410841.3	8048736794	410841	67.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30558	Kaistia defluvii partial 16S rRNA gene, type strain B6-12T	AM409365	1456		410841

GC content

@ref	GC-content (mol%)	Method
30558	63
67770	63	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kaistia defluvii JCM 18034
NCBI: GCA_026343955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	yes
125438	anaerobic	anaerobicⓘ	no	98.50	no
125438	aerobic	aerobicⓘ	yes	84.42	yes
125438	spore-forming	spore-formingⓘ	no	84.46	no
125438	thermophilic	thermophileⓘ	no	97.57	yes
125438	flagellated	motile2+ⓘ	no	70.95	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kaistia algarum sp. nov., isolated from a freshwater green alga Paulinella chromatophora.	Lee Y, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002943	2018
Phylogeny	Kaistia defluvii sp. nov., isolated from river sediment.	Jin L, Kim KK, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.038687-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26889	IJSEM 2878 2012 ( DOI 10.1099/ijs.0.038687-0 , PubMed 22247212 )
#30558	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26889
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Kaistia defluvii (KCTC 23766, JCM 18034, B6-12)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_026343955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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