Name: Rhodopseudomonas thermotolerans JA576
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133804

Type strain:

Species: Rhodopseudomonas thermotolerans

Strain Designation: JA576

Culture col. no.: NBRC 108863, KCTC 15144

Strain history: <- Ch Sasikala, Bacterial Discovery Laboratory, Centre for Environment, IST, JNT Univ. Hyderabad, India

NCBI tax ID(s): 999700 (species)

Section

Rhodopseudomonas thermotolerans JA576 is an anaerobe, motile, rod-shaped bacterium that was isolated from soil.

motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Rhodopseudomonas*
	Species	**Rhodopseudomonas thermotolerans**
	Full Scientific Name (LPSN)	Rhodopseudomonas thermotolerans Kumar et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #30555]	Cell length	3.5 µm

[Ref.: #30555]	Cell width	0.9 µm

[Ref.: #30555]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30555]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.821

[Ref.: #67771]	Flagellum arrangement	monotrichous, polar

[Ref.: #30555]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30555]	growth	25-60 °C
[Ref.: #30555]	optimum	42.5 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #30555]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30555]			optimum	7
[Ref.: #30555]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30555]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #67771]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30555]	acetate ChEBI	+	carbon source
[Ref.: #30555]	aspartate ChEBI	+	carbon source
[Ref.: #30555]	malate ChEBI	+	carbon source
[Ref.: #30555]	pyruvate ChEBI	+	carbon source
[Ref.: #30555]	valerate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30555]	Sample type/isolated from	soil

[Ref.: #67771]	Sample type/isolated from	From paddy cultivated soils near Vijayawada
[Ref.: #67771]	Geographic location (country and/or sea, region)	Andhra Pradesh
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	16.1875°/80.7902°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR851928 (>99% sequence identity) for Rhodopseudomonas from Microbeatlas

Aquatic Samples	2339
Soil Samples	2712
Animal Samples	2268
Plant Samples	1509
Total Samples	8828

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30555]	Rhodopseudomonas thermotolerans partial 16S rRNA gene, type strain JA576T	FR851928	1362	GenBank	999700 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144	GCA_003387125	scaffold	GenBank	999700 tax ID	*
[Ref.: #66792]	Rhodopseudomonas thermotolerans strain JA576,NBRC 108863,KCTC 15144	999700.3	wgs	PATRIC	999700 tax ID	*
[Ref.: #66792]	Rhodopseudomonas thermotolerans JA576	2740891859	draft	JGI IMG/M	999700 tax ID	*

[Ref.: #30555]	GC-content	66.2 mol%
[Ref.: #67771]	GC-content	66.2 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodopseudomonas thermotolerans strain JA576,NBRC 108863,KCTC 15144 PATRIC: 999700.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 NCBI: GCA_003387125.1
[Ref.: #69480]	motile	yes	89.908	yes
[Ref.: #69480]	flagellated	yes	73.327	yes
[Ref.: #69480]	gram-positive	no	98.148	yes
[Ref.: #69480]	anaerobic	no	57.821	no
[Ref.: #69480]	aerobic	no	52.766	yes
[Ref.: #69480]	halophile	no	95.292	no
[Ref.: #69480]	spore-forming	no	94.304	no
[Ref.: #69480]	glucose-util	yes	65.197	no
[Ref.: #69480]	thermophile	no	99.512	no
[Ref.: #69480]	glucose-ferment	no	92.782	no

Availability in culture collections External links

[Ref.: #30555]

Culture collection no.

NBRC 108863, KCTC 15144

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodopseudomonas pentothenatexigens sp. nov. and Rhodopseudomonas thermotolerans sp. nov., isolated from paddy soils.	Kumar BV, Ramprasad EVV, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.038620-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30555

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26886 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26886

IJSEM 200 2013 ( DOI 10.1099/ijs.0.038620-0 , PubMed 22389282 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhodopseudomonas thermotolerans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Rhodopseudomonas thermotolerans strain JA576,NBRC 108863,KCTC 15144

Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144

Change proposal

Change proposal