Name: Rhodopseudomonas pentothenatexigens JA575
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133803

Type strain:

Species: Rhodopseudomonas pentothenatexigens

Strain Designation: JA575

Culture col. no.: NBRC 108862, KCTC 15143

Strain history: <- Ch Sasikala, Bacterial Discovery Laboratory, Centre for Environment, IST, JNT Univ. Hyderabad, India

NCBI tax ID(s): 999699 (species)

Section

Rhodopseudomonas pentothenatexigens JA575 is an anaerobe, motile, rod-shaped bacterium that was isolated from soil.

motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Rhodopseudomonas*
	Species	**Rhodopseudomonas pentothenatexigens**
	Full Scientific Name (LPSN)	Rhodopseudomonas pentothenatexigens Kumar et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #30555]	Cell length	4 µm

[Ref.: #30555]	Cell width	0.75 µm

[Ref.: #30555]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30555]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.821

[Ref.: #67771]	Flagellum arrangement	monotrichous, polar

[Ref.: #30555]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30555]	growth	25-50 °C
[Ref.: #30555]	optimum	37.5 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #30555]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30555]			optimum	7.5
[Ref.: #30555]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30555]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #67771]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30555]	aspartate ChEBI	+	carbon source
[Ref.: #30555]	pyruvate ChEBI	+	carbon source
[Ref.: #30555]	valerate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30555]	Sample type/isolated from	soil

[Ref.: #67771]	Sample type/isolated from	From paddy cultivated soils near Nandyala
[Ref.: #67771]	Geographic location (country and/or sea, region)	Andhra Pradesh
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	15.4965°/78.4427°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR851927 (>99% sequence identity) for Rhodopseudomonas from Microbeatlas

Aquatic Samples	2339
Soil Samples	2712
Animal Samples	2268
Plant Samples	1509
Total Samples	8828

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30555]	Rhodopseudomonas pentothenatexigens partial 16S rRNA gene, type strain JA575T	FR851927	1436	GenBank	999699 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodopseudomonas pentothenatexigens JA575	GCA_900218015	scaffold	GenBank	999699 tax ID	*
[Ref.: #66792]	Rhodopseudomonas pentothenatexigens JA575	GCA_003385925	scaffold	GenBank	999699 tax ID	*

[Ref.: #30555]	GC-content	64.8 mol%
[Ref.: #67771]	GC-content	64.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodopseudomonas pentothenatexigens JA575 NCBI: GCA_900218015.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodopseudomonas pentothenatexigens JA575 NCBI: GCA_900218015.1
[Ref.: #69480]	flagellated	yes	73.327	yes
[Ref.: #69480]	gram-positive	no	98.148	yes
[Ref.: #69480]	anaerobic	no	57.911	yes
[Ref.: #69480]	aerobic	no	53.579	yes
[Ref.: #69480]	halophile	no	95.292	no
[Ref.: #69480]	spore-forming	no	94.304	no
[Ref.: #69480]	thermophile	no	99.512	yes
[Ref.: #69480]	glucose-util	yes	65.197	no
[Ref.: #69480]	motile	yes	89.908	yes
[Ref.: #69480]	glucose-ferment	no	92.782	no

Availability in culture collections External links

[Ref.: #30555]

Culture collection no.

NBRC 108862, KCTC 15143

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genomic and genetic sequence information of strains assigned to the genus Rhodopseudomonas reveal the great heterogeneity of the group and identify strain Rhodopseudomonas palustris DSM 123(T) as the authentic type strain of this species.	Imhoff JF, Meyer TE, Kyndt J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004077	2020	*
Phylogeny	Rhodopseudomonas pentothenatexigens sp. nov. and Rhodopseudomonas thermotolerans sp. nov., isolated from paddy soils.	Kumar BV, Ramprasad EVV, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.038620-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30555

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26886 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26886

IJSEM 200 2013 ( DOI 10.1099/ijs.0.038620-0 , PubMed 22389282 )

* These data were automatically processed and therefore are not curated

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