Name: Herbidospora mongoliensis MN08-A0118
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133792

Type strain:

Species: Herbidospora mongoliensis

Strain Designation: MN08-A0118

Culture col. no.: NBRC 105882, VTCC D9-22

NCBI tax ID(s): 688067 (species)

Section

Herbidospora mongoliensis MN08-A0118 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Herbidospora*
	Species	**Herbidospora mongoliensis**
	Full Scientific Name (LPSN)	Herbidospora mongoliensis Ara et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30517]	Gram stain	positive

[Ref.: #30517]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30517]			growth	25-30 °C
[Ref.: #30517]			optimum	27.5 °C

[Ref.: #30517]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30517]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30517]

Oxygen tolerance

aerobe

[Ref.: #30517]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30517]		NaCl		growth	<1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30517]	glucose ChEBI	+	carbon source
[Ref.: #30517]	glycogen ChEBI	+	carbon source
[Ref.: #30517]	lactose ChEBI	+	carbon source
[Ref.: #30517]	maltose ChEBI	+	carbon source
[Ref.: #30517]	mannitol ChEBI	+	carbon source
[Ref.: #30517]	sucrose ChEBI	+	carbon source
[Ref.: #30517]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30517]	acid phosphatase	+	3.1.3.2
[Ref.: #30517]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30517]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30517]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB530492 (>99% sequence identity) for Herbidospora mongoliensis subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	106
Animal Samples	5
Plant Samples	33
Total Samples	152

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30517]	Herbidospora mongoliensis gene for 16S rRNA, partial sequence	AB530492	1463	GenBank	688067 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Herbidospora mongoliensis NBRC 105882	GCA_001570545	scaffold	GenBank	688067 tax ID	*
[Ref.: #66792]	Herbidospora mongoliensis strain NBRC 105882	688067.3	wgs	PATRIC	688067 tax ID	*
[Ref.: #66792]	Herbidospora mongoliensis NBRC 105882	2724679241	draft	JGI IMG/M	688067 tax ID	*

[Ref.: #30517]

GC-content

69.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herbidospora mongoliensis NBRC 105882 NCBI: GCA_001570545.1
[Ref.: #69480]	flagellated	no	98.158	no
[Ref.: #69480]	gram-positive	yes	89.971	yes
[Ref.: #69480]	anaerobic	no	99.127	yes
[Ref.: #69480]	aerobic	yes	93.571	no
[Ref.: #69480]	halophile	no	94.031	no
[Ref.: #69480]	spore-forming	yes	95.498	yes
[Ref.: #69480]	thermophile	no	99.118	yes
[Ref.: #69480]	glucose-util	yes	88.527	yes
[Ref.: #69480]	motile	no	92.25	no
[Ref.: #69480]	glucose-ferment	no	92.44	no

Availability in culture collections External links

[Ref.: #30517]

Culture collection no.

NBRC 105882, VTCC D9-22

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based analysis of non-ribosomal peptide synthetase and type-I polyketide synthase gene clusters in all type strains of the genus Herbidospora.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N	BMC Res Notes	10.1186/s13104-015-1526-9	2015	*
Phylogeny	Herbidospora mongoliensis sp. nov., isolated from soil, and reclassification of Herbidospora osyris and Streptosporangium claviforme as synonyms of Herbidospora cretacea.	Ara I, Tsetseg B, Daram D, Suto M, Ando K	Int J Syst Evol Microbiol	10.1099/ijs.0.037861-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30517

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26849 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26849

IJSEM 2322 2012 ( DOI 10.1099/ijs.0.037861-0 , PubMed 22140157 )

* These data were automatically processed and therefore are not curated

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Herbidospora mongoliensis NBRC 105882

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