Name: Halopenitus persicus DC30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133781

Type strain:

Species: Halopenitus persicus

Strain Designation: DC30

Culture col. no.: IBRC 10041, KCTC 4046

Strain history: <- M A Amoozegar, Univ. of Tehran, Iran

NCBI tax ID(s): 1048396 (species)

SI-ID 380876

KCTC 4046, CECT 8174

Section

Halopenitus persicus DC30 is an aerobe, Gram-negative, rod-shaped archaeon that was isolated from hypersaline environment.

Gram-negative
rod-shaped
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halopenitus*
	Species	**Halopenitus persicus**
	Full Scientific Name (LPSN)	Halopenitus persicus Amoozegar et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30476]	Gram stain	negative

[Ref.: #30476]	Cell length	7 µm

[Ref.: #30476]	Cell width	1 µm

[Ref.: #30476]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	pleomorphic-shaped

[Ref.: #30476]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #30476]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30476]	growth	25-50 °C
[Ref.: #30476]	optimum	40 °C
[Ref.: #67771]	growth	40 °C

[Ref.: #30476]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30476]			optimum	7.5
[Ref.: #30476]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30476]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30476]		NaCl		growth	10-25	%
[Ref.: #30476]		NaCl		optimum	17	%

[Ref.: #67771]

Observation

quinones: MK-8(II-H(2))

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30476]	asparagine ChEBI	+	carbon source
[Ref.: #30476]	fructose ChEBI	+	carbon source
[Ref.: #30476]	galactose ChEBI	+	carbon source
[Ref.: #30476]	glucose ChEBI	+	carbon source
[Ref.: #30476]	glycine ChEBI	+	carbon source
[Ref.: #30476]	maltose ChEBI	+	carbon source
[Ref.: #30476]	proline ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30476]		catalase	+	1.11.1.6
[Ref.: #30476]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30476]	Sample type/isolated from	hypersaline environment

[Ref.: #67771]	Sample type/isolated from	From salt water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Aran-Bidgol Salt Lake
[Ref.: #67771]	Country	Iran
[Ref.: #67771]	Country ISO 3 Code	IRN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30476]	Halopenitus persicus strain DC30 16S ribosomal RNA gene, partial sequence	JF979130	1440	GenBank	1048396 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halopenitus persicus DC30,IBRC 10041,KCTC 4046	GCA_900107205	scaffold	GenBank	1048396 tax ID	*
[Ref.: #66792]	Halopenitus persicus IBRC10041	2654587885	draft	JGI IMG/M	1048396 tax ID	*
[Ref.: #66792]	Halopenitus persicus strain DC30,IBRC 10041,KCTC 4046	1048396.9	wgs	PATRIC	1048396 tax ID	*

[Ref.: #30476]	GC-content	66 mol%
[Ref.: #67771]	GC-content	66.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halopenitus persicus DC30,IBRC 10041,KCTC 4046 NCBI: GCA_900107205.1
[Ref.: #69480]	motile	no	79.459	no
[Ref.: #69480]	glucose-ferment	no	83.925	no
[Ref.: #69480]	flagellated	no	97.892	no
[Ref.: #69480]	gram-positive	no	97.3	yes
[Ref.: #69480]	anaerobic	no	94.801	yes
[Ref.: #69480]	aerobic	yes	80.044	no
[Ref.: #69480]	halophile	yes	91.69	no
[Ref.: #69480]	spore-forming	no	96.423	no
[Ref.: #69480]	thermophile	no	70.253	no
[Ref.: #69480]	glucose-util	yes	88.533	yes

Availability in culture collections External links

[Ref.: #30476]

Culture collection no.

IBRC 10041, KCTC 4046

[Ref.: #91596]

SI-ID 380876

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halopenitus salinus sp. nov., isolated from the brine of salted brown alga Laminaria.	Han D, Cui HL, Li ZR	Antonie Van Leeuwenhoek	10.1007/s10482-014-0244-y	2014	*
Phylogeny	Halopenitus malekzadehii sp. nov., an extremely halophilic archaeon isolated from a salt lake.	Amoozegar MA, Makhdoumi-Kakhki A, Mehrshad M, Fazeli SAS, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.050500-0	2013	*
Phylogeny	Halopenitus persicus gen. nov., sp. nov., an archaeon from an inland salt lake.	Amoozegar MA, Makhdoumi-Kakhki A, Shahzadeh Fazeli SA, Azarbaijani R, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.036921-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30476

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26811 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91596

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380876.1 )

#26811

IJSEM 1932 2012 ( DOI 10.1099/ijs.0.036921-0 , PubMed 22003044 )

* These data were automatically processed and therefore are not curated

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Halopenitus persicus DC30,IBRC 10041,KCTC 4046

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