Name: Halomonas beimenensis NTU-107
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133780

Type strain:

Species: Halomonas beimenensis

Strain Designation: NTU-107

Culture col. no.: BCRC 17999, KCTC 22876, JCM 16084

Strain history: Y.-T. Shyu NTU-107.

NCBI tax ID(s): 475662 (species)

Section

Halomonas beimenensis NTU-107 is an aerobe, Gram-negative, motile bacterium that was isolated from Saltern brine sediment.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas beimenensis**
	Full Scientific Name (LPSN)	Halomonas beimenensis Wang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30473]	Gram stain	negative

[Ref.: #30473]	Cell length	1.75 µm

[Ref.: #30473]	Cell width	1.15 µm

[Ref.: #30473]	Cell shape	rod-shaped

[Ref.: #30473]	Motility	yes

[Ref.: #30473]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30473]	growth	15-50 °C
[Ref.: #30473]	optimum	40 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #30473]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30473]			optimum	7.5
[Ref.: #30473]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30473]

Oxygen tolerance

aerobe

[Ref.: #30473]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30473]		NaCl		growth	0-15	%
[Ref.: #30473]		NaCl		optimum	7.5	%

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30473]	cellobiose ChEBI	+	carbon source
[Ref.: #30473]	esculin ChEBI	+	hydrolysis
[Ref.: #30473]	fructose ChEBI	+	carbon source
[Ref.: #30473]	galactose ChEBI	+	carbon source
[Ref.: #30473]	glucose ChEBI	+	carbon source
[Ref.: #30473]	maltose ChEBI	+	carbon source
[Ref.: #30473]	mannose ChEBI	+	carbon source
[Ref.: #30473]	raffinose ChEBI	+	carbon source
[Ref.: #30473]	sucrose ChEBI	+	carbon source
[Ref.: #30473]	trehalose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30473]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #30473]	catalase	+	1.11.1.6
[Ref.: #30473]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30473]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30473]	Sample type/isolated from	Saltern brine sediment

[Ref.: #67770]	Sample type/isolated from	Salt field of the abandoned Beimen saltern in southern Taiwan
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30473]	Halomonas beimenensis strain NTU-107 16S ribosomal RNA gene, partial sequence	EU159469	1412	GenBank	475662 tax ID

[Ref.: #30473]	GC-content	66.5 mol%
[Ref.: #67770]	GC-content	66.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30473]

Culture collection no.

BCRC 17999, KCTC 22876, JCM 16084

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas beimenensis sp. nov., isolated from an abandoned saltern.	Wang CY, Wu SJ, Ng CC, Tzeng WS, Shyu YT	Int J Syst Evol Microbiol	10.1099/ijs.0.036871-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30473

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26808 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#26808

IJSEM 3013 2012 ( DOI 10.1099/ijs.0.036871-0 , PubMed 22307517 )

* These data were automatically processed and therefore are not curated

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