Name: Cobetia litoralis KMM 3880
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133778

Type strain:

Species: Cobetia litoralis

Culture col. no.: KMM 3880, NRIC 0814, CCUG 49563

NCBI tax ID(s): 1055102 (species)

SI-ID 411189

CCUG 49563

Other strains from Cobetia litoralis

C. litoralis CCUG 49559, KMM 1383

Section

Cobetia litoralis KMM 3880 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Cobetia*
	Species	**Cobetia litoralis**
	Full Scientific Name (LPSN)	Cobetia litoralis Romanenko et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30472]	Gram stain	negative

[Ref.: #30472]	Cell length	2 µm

[Ref.: #30472]	Cell width	0.8 µm

[Ref.: #30472]	Cell shape	rod-shaped

[Ref.: #30472]	Motility	yes

[Ref.: #58608]

Incubation period

2-3 days

[Ref.: #30472]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30472]	growth	04-42 °C
[Ref.: #30472]	optimum	36 °C
[Ref.: #58608]	growth	30 °C

[Ref.: #30472]	Temperature range	mesophilic
[Ref.: #58608]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30472]			optimum	8
[Ref.: #30472]			growth	5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30472]	Oxygen tolerance	aerobe
[Ref.: #58608]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30472]		NaCl		growth	0-20	%
[Ref.: #30472]		NaCl		optimum	5.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30472]	arabinose ChEBI	+	carbon source
[Ref.: #30472]	cellobiose ChEBI	+	carbon source
[Ref.: #30472]	decanoate ChEBI	+	carbon source
[Ref.: #30472]	galactose ChEBI	+	carbon source
[Ref.: #30472]	gluconate ChEBI	+	carbon source
[Ref.: #30472]	glucose ChEBI	+	carbon source
[Ref.: #30472]	glycogen ChEBI	+	carbon source
[Ref.: #30472]	histidine ChEBI	+	carbon source
[Ref.: #30472]	lactose ChEBI	+	carbon source
[Ref.: #30472]	malate ChEBI	+	carbon source
[Ref.: #30472]	malonate ChEBI	+	carbon source
[Ref.: #30472]	maltose ChEBI	+	carbon source
[Ref.: #30472]	mannitol ChEBI	+	carbon source
[Ref.: #30472]	ribose ChEBI	+	carbon source
[Ref.: #30472]	salicin ChEBI	+	carbon source
[Ref.: #30472]	suberic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30472]	acid phosphatase	+	3.1.3.2
[Ref.: #30472]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30472]	catalase	+	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #58608]

Fatty acid	Percentage	ECL
C16:0	29.5	16
C16:1 ω7c	19.4	15.819
C18:1 ω7c /12t/9t	18.3	17.824
C17:0 CYCLO	16.7	16.888
C12:0 3OH	6.9	13.455
C12:0	3.9	12
C19:0 CYCLO ω8c	3.7	18.9
C10:0	1.6	10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30472]	Sample type/isolated from	marine sediment

[Ref.: #58608]	Sample type/isolated from	Sandy sediment
[Ref.: #58608]	Sampling date	2002-07-01
[Ref.: #58608]	Geographic location (country and/or sea, region)	The Sea of Japan,offshore
[Ref.: #58608]	Country	Russia
[Ref.: #58608]	Country ISO 3 Code	RUS
[Ref.: #58608]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB646234 (>99% sequence identity) for Cobetia from Microbeatlas

Aquatic Samples	12909
Soil Samples	974
Animal Samples	5462
Plant Samples	226
Total Samples	19571

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30472]	Cobetia litoralis gene for 16S ribosomal RNA, partial sequence	AB646234	1516	GenBank	1055102 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cobetia litoralis NRIC 0814	GCA_029846315	contig	GenBank	1055102 tax ID	*

[Ref.: #30472]

GC-content

64.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cobetia litoralis NRIC 0814 NCBI: GCA_029846315.1
[Ref.: #69480]	motile	yes	88.495	yes
[Ref.: #69480]	flagellated	no	74.291	no
[Ref.: #69480]	gram-positive	no	97.498	yes
[Ref.: #69480]	anaerobic	no	97.39	yes
[Ref.: #69480]	aerobic	yes	92.658	yes
[Ref.: #69480]	halophile	yes	82.396	no
[Ref.: #69480]	spore-forming	no	96.96	no
[Ref.: #69480]	glucose-ferment	no	80.122	no
[Ref.: #69480]	thermophile	no	95.331	yes
[Ref.: #69480]	glucose-util	yes	89.875	yes

Availability in culture collections External links

[Ref.: #30472]

Culture collection no.

KMM 3880, NRIC 0814, CCUG 49563

[Ref.: #91594]

SI-ID 411189

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Cobetia amphilecti sp. nov., Cobetia litoralis sp. nov. and Cobetia pacifica sp. nov., classification of Halomonas halodurans as a later heterotypic synonym of Cobetia marina and emended descriptions of the genus Cobetia and Cobetia marina.	Romanenko LA, Tanaka N, Svetashev VI, Falsen E	Int J Syst Evol Microbiol	10.1099/ijs.0.036863-0	2012	*
Pathogenicity	Structure and anticancer activity of sulfated O-polysaccharide from marine bacterium Cobetia litoralis KMM 3880(T).	Kokoulin MS, Kuzmich AS, Kalinovsky AI, Tomshich SV, Romanenko LA, Mikhailov VV, Komandrova NA	Carbohydr Polym	10.1016/j.carbpol.2016.08.036	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30472

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26807 (see below)

#58608 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49563

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91594

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411189.1 )

#26807

IJSEM 288 2013 ( DOI 10.1099/ijs.0.036863-0 , PubMed 22427450 )

* These data were automatically processed and therefore are not curated

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Cobetia litoralis NRIC 0814

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