Name: Cobetia pacifica NRIC 0813
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133777

Type strain:

Species: Cobetia pacifica

Culture col. no.: NRIC 0813, CCUG 49562, KMM 3879

NCBI tax ID(s): 1055101 (species)

SI-ID 409239

CCUG 49562

Other strains from Cobetia pacifica

C. pacifica CCUG 49561, KMM 3878

Section

Cobetia pacifica NRIC 0813 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Cobetia*
	Species	**Cobetia pacifica**
	Full Scientific Name (LPSN)	Cobetia pacifica Romanenko et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30472]	Gram stain	negative

[Ref.: #30472]	Cell length	1.35 µm

[Ref.: #30472]	Cell width	0.85 µm

[Ref.: #30472]	Cell shape	rod-shaped

[Ref.: #30472]	Motility	yes

[Ref.: #30472]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30472]	growth	04-42 °C
[Ref.: #30472]	optimum	36.5 °C
[Ref.: #58607]	growth	28 °C

[Ref.: #30472]	Temperature range	mesophilic
[Ref.: #58607]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30472]			optimum	8
[Ref.: #30472]			growth	04-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30472]	Oxygen tolerance	aerobe
[Ref.: #58607]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30472]		NaCl		growth	0-20	%
[Ref.: #30472]		NaCl		optimum	5.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30472]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #30472]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #30472]	arabinose ChEBI	+	carbon source
[Ref.: #30472]	cellobiose ChEBI	+	carbon source
[Ref.: #30472]	fructose ChEBI	+	carbon source
[Ref.: #30472]	galactose ChEBI	+	carbon source
[Ref.: #30472]	glucose ChEBI	+	carbon source
[Ref.: #30472]	glycogen ChEBI	+	carbon source
[Ref.: #30472]	histidine ChEBI	+	carbon source
[Ref.: #30472]	inosine ChEBI	+	carbon source
[Ref.: #30472]	lactose ChEBI	+	carbon source
[Ref.: #30472]	malate ChEBI	+	carbon source
[Ref.: #30472]	melibiose ChEBI	+	carbon source
[Ref.: #30472]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30472]	propionate ChEBI	+	carbon source
[Ref.: #30472]	rhamnose ChEBI	+	carbon source
[Ref.: #30472]	ribose ChEBI	+	carbon source
[Ref.: #30472]	salicin ChEBI	+	carbon source
[Ref.: #30472]	sorbitol ChEBI	+	carbon source
[Ref.: #30472]	suberic acid ChEBI	+	carbon source
[Ref.: #30472]	sucrose ChEBI	+	carbon source
[Ref.: #30472]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30472]	acid phosphatase	+	3.1.3.2
[Ref.: #30472]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30472]	catalase	+	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #58607]

Fatty acid	Percentage	ECL
C16:0	30.2	16
C16:1 ω7c	21.4	15.819
C18:1 ω7c /12t/9t	17.8	17.824
C17:0 CYCLO	14.9	16.888
C12:0 3OH	7.1	13.455
C12:0	3.5	12
C19:0 CYCLO ω8c	3	18.9
C10:0	2.2	10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30472]	Sample type/isolated from	marine sediment

[Ref.: #58607]	Sample type/isolated from	Sandy sediment
[Ref.: #58607]	Sampling date	2002-07-01
[Ref.: #58607]	Geographic location (country and/or sea, region)	The Sea of Japan,offshore
[Ref.: #58607]	Country	Russia
[Ref.: #58607]	Country ISO 3 Code	RUS
[Ref.: #58607]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB646233 (>99% sequence identity) for Cobetia from Microbeatlas

Aquatic Samples	12909
Soil Samples	974
Animal Samples	5462
Plant Samples	226
Total Samples	19571

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30472]	Cobetia pacifica gene for 16S ribosomal RNA, partial sequence	AB646233	1524	GenBank	1055101 tax ID

[Ref.: #30472]

GC-content

62.5 mol%

Availability in culture collections External links

[Ref.: #30472]

Culture collection no.

NRIC 0813, CCUG 49562, KMM 3879

[Ref.: #91593]

SI-ID 409239

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Cobetia amphilecti sp. nov., Cobetia litoralis sp. nov. and Cobetia pacifica sp. nov., classification of Halomonas halodurans as a later heterotypic synonym of Cobetia marina and emended descriptions of the genus Cobetia and Cobetia marina.	Romanenko LA, Tanaka N, Svetashev VI, Falsen E	Int J Syst Evol Microbiol	10.1099/ijs.0.036863-0	2012	*
Enzymology	The sulfated O-specific polysaccharide from the marine bacterium Cobetia pacifica KMM 3879(T.).	Kokoulin MS, Kalinovsky AI, Komandrova NA, Tomshich SV, Romanenko LA, Vaskovsky VE	Carbohydr Res	10.1016/j.carres.2014.01.015	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30472

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26807 (see below)

#58607 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49562

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91593

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID409239.1 )

#26807

IJSEM 288 2013 ( DOI 10.1099/ijs.0.036863-0 , PubMed 22427450 )

* These data were automatically processed and therefore are not curated

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