Sphingobacterium detergens (CECT 7938, LMG 26465, 6.2S)

Name: Sphingobacterium detergens (CECT 7938, LMG 26465, 6.2S)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133774

Type strain

Strain Designation 6.2S

Culture col. no. CECT 7938 LMG 26465 6.2S

NCBI tax ID(s) 1145106

Special Collections Literature strains

Links

Sphingobacterium detergens 6.2S is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 377581

LMG 26465,CECT 7938

@ref 20215

Last LPSN update 2026-02-09 11:32:02

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Sphingobacterium

Species Sphingobacterium detergens

Full scientific name Sphingobacterium detergens Marqués et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30465	negative	2.15 µm	0.9 µm	rod-shaped
125439	negative				99.6
125438					90
125438	negative				97.5

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30465	positive	growth	15-37
30465	positive	optimum	33.5

Culture pH

@ref	Ability	Type	PH
30465	positive	optimum	7
30465	positive	growth	6-7.5

Physiology and metabolism

Oxygen tolerance

30465

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
30465
125439		98.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30465	NaCl	positive	growth	0-3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30465	22599 ChEBI	arabinose	+	carbon source
30465	4853 ChEBI	esculin	+	hydrolysis
30465	17234 ChEBI	glucose	+	carbon source
30465	17754 ChEBI	glycerol	+	carbon source
30465	17306 ChEBI	maltose	+	carbon source
30465	37684 ChEBI	mannose	+	carbon source
30465	28053 ChEBI	melibiose	+	carbon source
30465	506227 ChEBI	N-acetylglucosamine	+	carbon source
30465	26546 ChEBI	rhamnose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30465	catalase	+	1.11.1.6
30465	cytochrome oxidase	+	1.9.3.1
30465	gelatinase	+
30465	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

30465

Sample typesoil

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM361035v1 assembly for Sphingobacterium detergens CECT 7938	scaffold	GCA_003610355	1145106.3	2772190801	1145106	70.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30465	Sphingobacterium detergens strain 6.2S 16S ribosomal RNA gene, partial sequence	JN015213	1483		1145106

GC content

30465

GC-content (mol%)40

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingobacterium detergens CECT 7938
NCBI: GCA_003610355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	motility	BacteriaNetⓘ	no	56.20	no
125439	spore_formation	BacteriaNetⓘ	no	98.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingobacterium detergens CECT 7938
NCBI: GCA_003610355.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	yes
125438	anaerobic	anaerobicⓘ	no	95.53	no
125438	aerobic	aerobicⓘ	yes	82.00	no
125438	spore-forming	spore-formingⓘ	no	87.98	yes
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium caeni sp. nov., isolated from activated sludge.	Sun LN, Zhang J, Chen Q, He J, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.046987-0	2012
Phylogeny	Sphingobacterium detergens sp. nov., a surfactant-producing bacterium isolated from soil.	Marques AM, Burgos-Diaz C, Aranda FJ, Teruel JA, Manresa A, Ortiz A, Farfan M	Int J Syst Evol Microbiol	10.1099/ijs.0.036707-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26800	IJSEM 3036 2012 ( DOI 10.1099/ijs.0.036707-0 , PubMed 22307508 )
#30465	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26800
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobacterium detergens (CECT 7938, LMG 26465, 6.2S)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003610355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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