Name: Chryseobacterium viscerum 687B-08
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133773

Type strain:

Species: Chryseobacterium viscerum

Strain Designation: 687B-08

Culture col. no.: CECT 7793, CCUG 60103

NCBI tax ID(s): 1037377 (species)

SI-ID 382383

CCUG 60103, CECT 7793, CECT 7845

Section

Chryseobacterium viscerum 687B-08 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Diseased fish.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium viscerum**
	Full Scientific Name (LPSN)	Chryseobacterium viscerum Zamora et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30464]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #30464]	Cell length	2.4 µm

[Ref.: #30464]	Cell width	0.8 µm

[Ref.: #30464]	Cell shape	rod-shaped

[Ref.: #30464]	Motility	no

[Ref.: #30464]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30464]	growth	15-30 °C
[Ref.: #30464]	optimum	25 °C
[Ref.: #62202]	growth	30 °C

[Ref.: #30464]	Temperature range	mesophilic
[Ref.: #62202]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30464]	Oxygen tolerance	aerobe
[Ref.: #62202]	Oxygen tolerance	aerobe

[Ref.: #30464]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30464]	citrate ChEBI	+	carbon source
[Ref.: #30464]	esculin ChEBI	+	hydrolysis
[Ref.: #30464]	glucose ChEBI	+	carbon source
[Ref.: #30464]	maltose ChEBI	+	carbon source
[Ref.: #30464]	mannitol ChEBI	+	carbon source
[Ref.: #30464]	mannose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30464]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30464]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #30464]	acid phosphatase	+	3.1.3.2
[Ref.: #30464]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30464]	catalase	+	1.11.1.6
[Ref.: #30464]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30464]	gelatinase	+
[Ref.: #30464]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30464]	Sample type/isolated from	Diseased fish

[Ref.: #62202]	Sample type/isolated from	Gills of diseased trout (Oncorhynchus mykiss)
[Ref.: #62202]	Sampling date	2008-03-25
[Ref.: #62202]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #62202]	Country	Spain
[Ref.: #62202]	Country ISO 3 Code	ESP
[Ref.: #62202]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Infection	#Disease	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30464]	Chryseobacterium viscerum partial 16S rRNA gene, type strain 687B-08T	FR871426	1333	GenBank	1037377 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium viscerum 687B-08	GCA_002899945	scaffold	GenBank	1037377 tax ID	*
[Ref.: #66792]	Chryseobacterium viscerum 687B-08	2871710237	draft	JGI IMG/M	1037377 tax ID	*

[Ref.: #30464]

GC-content

38.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium viscerum 687B-08 NCBI: GCA_002899945.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium viscerum 687B-08 NCBI: GCA_002899945.1
[Ref.: #69480]	flagellated	no	95.086	yes
[Ref.: #69480]	gram-positive	no	97.492	yes
[Ref.: #69480]	anaerobic	no	99.458	yes
[Ref.: #69480]	aerobic	yes	92.774	yes
[Ref.: #69480]	halophile	no	94.771	no
[Ref.: #69480]	spore-forming	no	93.175	yes
[Ref.: #69480]	glucose-util	yes	84.913	yes
[Ref.: #69480]	thermophile	no	99.799	no
[Ref.: #69480]	motile	no	91.243	no
[Ref.: #69480]	glucose-ferment	no	91.723	no
[Ref.: #69480]	flagellated	no	95.086	yes
[Ref.: #69480]	gram-positive	no	97.492	yes
[Ref.: #69480]	anaerobic	no	99.458	yes
[Ref.: #69480]	aerobic	yes	92.774	yes
[Ref.: #69480]	halophile	no	94.771	no
[Ref.: #69480]	spore-forming	no	93.175	yes
[Ref.: #69480]	glucose-util	yes	84.913	yes
[Ref.: #69480]	thermophile	no	99.799	no
[Ref.: #69480]	motile	no	91.243	no
[Ref.: #69480]	glucose-ferment	no	91.723	no

Availability in culture collections External links

[Ref.: #30464]

Culture collection no.

CECT 7793, CCUG 60103

[Ref.: #91591]

SI-ID 382383

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium panacisoli sp. nov., isolated from ginseng-cultivation soil with ginsenoside-converting activity.	Keum DH, Yeon JM, Yun CS, Lee SY, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.005086	2021	*
Phylogeny	Chryseobacterium phosphatilyticum sp. nov., a phosphate-solubilizing endophyte isolated from cucumber (Cucumis sativus L.) root.	Jeong JJ, Sang MK, Lee DW, Choi IG, Kim KD	Int J Syst Evol Microbiol	10.1099/ijsem.0.003091	2018	*
Phylogeny	Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.	Venil CK, Nordin N, Zakaria ZA, Ahmad WA	Int J Syst Evol Microbiol	10.1099/ijs.0.063594-0	2014	*
Phylogeny	Chryseobacterium viscerum sp. nov., isolated from diseased fish.	Zamora L, Vela AI, Palacios MA, Sanchez-Porro C, Svensson-Stadler LA, Dominguez L, Moore ERB, Ventosa A, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.036699-0	2012	*
Phylogeny	Chryseobacterium lecithinasegens sp. nov., a siderophore-producing bacterium isolated from soil at the bottom of a pond.	Kutsuna R, Mashima I, Miyoshi-Akiyama T, Muramatsu Y, Tomida J, Kawamura Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005135	2021	*
Genetics	Draft Genome Sequences of Chryseobacterium lactis NCTC11390(T) Isolated from Milk, Chryseobacterium oncorhynchi 701B-08(T) from Rainbow Trout, and Chryseobacterium viscerum 687B-08(T) from Diseased Fish.	Jeong JJ, Lee YJ, Pathiraja D, Park B, Choi IG, Kim KD	Genome Announc	10.1128/genomeA.00628-18	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30464

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26799 (see below)

#62202 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60103

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91591

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID382383.1 )

#26799

IJSEM 2934 2012 ( DOI 10.1099/ijs.0.036699-0 , PubMed 22268076 )

* These data were automatically processed and therefore are not curated

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