Name: Oceanisphaera arctica V1-41
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133770

Type strain:

Species: Oceanisphaera arctica

Strain Designation: V1-41

Culture col. no.: CCUG 58690, KCTC 23013, NBRC 106171

NCBI tax ID(s): 641510 (species)

SI-ID 412113

CCUG 58690

Section

Oceanisphaera arctica V1-41 is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from marine sediment.

coccus-shaped
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Oceanisphaera*
	Species	**Oceanisphaera arctica**
	Full Scientific Name (LPSN)	Oceanisphaera arctica Srinivas et al. 2012

Synonym

"Oceanisphaera arctica"

Information on morphological and physiological properties Morphology

[Ref.: #30455]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.799

[Ref.: #30455]	Cell width	0.55 µm

[Ref.: #30455]	Cell shape	coccus-shaped

[Ref.: #30455]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %93.087

[Ref.: #30455]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30455]	growth	04-37 °C
[Ref.: #30455]	optimum	24 °C
[Ref.: #61740]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30455]			optimum	8
[Ref.: #30455]			growth	07-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30455]	Oxygen tolerance	aerobe
[Ref.: #61740]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %95.251

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30455]		NaCl		growth	0-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30455]	alanine ChEBI	+	carbon source
[Ref.: #30455]	arginine ChEBI	+	carbon source
[Ref.: #30455]	aspartate ChEBI	+	carbon source
[Ref.: #30455]	citrate ChEBI	+	carbon source
[Ref.: #30455]	D-tryptophan ChEBI	+	carbon source
[Ref.: #30455]	esculin ChEBI	+	hydrolysis
[Ref.: #30455]	histidine ChEBI	+	carbon source
[Ref.: #30455]	leucine ChEBI	+	carbon source
[Ref.: #30455]	nitrate ChEBI	+	reduction
[Ref.: #30455]	phenylalanine ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30455]	catalase	+	1.11.1.6
[Ref.: #30455]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30455]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30455]	Sample type/isolated from	marine sediment

[Ref.: #61740]	Sample type/isolated from	Marine sediment
[Ref.: #61740]	Sampling date	2007-08-09
[Ref.: #61740]	Geographic location (country and/or sea, region)	Svalbard,Kongsfjord region
[Ref.: #61740]	Country	Norway
[Ref.: #61740]	Country ISO 3 Code	NOR
[Ref.: #61740]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN377705 (>99% sequence identity) for Oceanisphaera arctica from Microbeatlas

Aquatic Samples	313
Soil Samples	24
Animal Samples	70
Plant Samples	9
Total Samples	416

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30455]	Oceanisphaera arctica partial 16S rRNA gene, isolate V1-41	FN377705	1536	GenBank ENA	641510 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oceanisphaera arctica V1-41	GCA_002936955	contig	GenBank ENA	641510 tax ID	*
[Ref.: #66792]	Oceanisphaera arctica KCTC 23013	GCA_014652055	scaffold	GenBank ENA	641510 tax ID	*
[Ref.: #66792]	Oceanisphaera arctica strain KCTC 23013	641510.7	wgs	PATRIC	641510 tax ID	*

[Ref.: #30455]

GC-content

60.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oceanisphaera arctica strain KCTC 23013 PATRIC: 641510.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oceanisphaera arctica KCTC 23013 NCBI: GCA_014652055.1
[Ref.: #69480]	motile	yes	93.087	no
[Ref.: #69480]	flagellated	yes	74.407	yes
[Ref.: #69480]	gram-positive	no	98.799	no
[Ref.: #69480]	anaerobic	no	99.13	yes
[Ref.: #69480]	aerobic	yes	89.269	yes
[Ref.: #69480]	halophile	yes	70.444	no
[Ref.: #69480]	spore-forming	no	95.251	no
[Ref.: #69480]	thermophile	no	98.592	no
[Ref.: #69480]	glucose-util	yes	85.265	no
[Ref.: #69480]	glucose-ferment	yes	55.66	no

Availability in culture collections External links

[Ref.: #30455]

Culture collection no.

CCUG 58690, KCTC 23013, NBRC 106171

[Ref.: #91589]

SI-ID 412113

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanisphaera psychrotolerans sp. nov., isolated from coastal sediment samples.	Zhou S, Wang H, Wang Y, Ma K, He M, Chen X, Kong D, Guo X, Ruan Z, Zhao B	Int J Syst Evol Microbiol	10.1099/ijs.0.000331	2015	*
Phylogeny	Oceanisphaera arctica sp. nov., isolated from Arctic marine sediment, and emended description of the genus Oceanisphaera.	Srinivas TNR, Reddy PVV, Begum Z, Manasa P, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.036475-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30455

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26790 (see below)

#61740 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58690

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91589

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID412113.1 )

#26790

IJSEM 1926 2012 ( DOI 10.1099/ijs.0.036475-0 , PubMed 22003041 )

* These data were automatically processed and therefore are not curated

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Search for species Oceanisphaera arctica in external resources:
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Oceanisphaera arctica strain KCTC 23013

Oceanisphaera arctica KCTC 23013

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