Name: Rhodococcus canchipurensis KCTC 19851
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133767

Type strain:

Species: Rhodococcus canchipurensis

Culture col. no.: KCTC 19851, JCM 17578, DSM 46692, MBRL 353

Strain history: S.-K. Tang and S. Sanasam MBRL 353.

NCBI tax ID(s): 1055466 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Rhodococcus canchipurensis KCTC 19851 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from limestone quarry.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Rhodococcus*
	Species	**Rhodococcus canchipurensis**
	Full Scientific Name (LPSN)	Rhodococcus canchipurensis Nimaichand et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30437]	Gram stain	positive

[Ref.: #30437]	Cell shape	rod-shaped

[Ref.: #30437]	Motility	no

Multimedia content

[Ref.: #64745]

Caption:

Medium 65 28°C

[Ref.: #64745]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30437]	growth	15-37 °C
[Ref.: #30437]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30437]			optimum	7
[Ref.: #30437]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30437]

Oxygen tolerance

aerobe

[Ref.: #30437]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30437]		NaCl		growth	0-5	%
[Ref.: #30437]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30437]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30437]	arginine ChEBI	+	carbon source
[Ref.: #30437]	fructose ChEBI	+	carbon source
[Ref.: #30437]	glycine ChEBI	+	carbon source
[Ref.: #30437]	histidine ChEBI	+	carbon source
[Ref.: #30437]	mannose ChEBI	+	carbon source
[Ref.: #30437]	phenylalanine ChEBI	+	carbon source
[Ref.: #30437]	serine ChEBI	+	carbon source
[Ref.: #30437]	sorbitol ChEBI	+	carbon source
[Ref.: #30437]	tween 20 ChEBI	+	carbon source
[Ref.: #30437]	tween 40 ChEBI	+	carbon source
[Ref.: #30437]	tween 60 ChEBI	+	carbon source
[Ref.: #30437]	tween 80 ChEBI	+	carbon source
[Ref.: #30437]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30437]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30437]	Sample type/isolated from	limestone quarry

[Ref.: #64745]	Sample type/isolated from	limestone quarry
[Ref.: #64745]	Geographic location (country and/or sea, region)	Manipur, Hundung (25.05° N, 94.33° E)
[Ref.: #64745]	Country	India
[Ref.: #64745]	Country ISO 3 Code	IND
[Ref.: #64745]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Limestone quarry at Hundung
[Ref.: #67770]	Geographic location (country and/or sea, region)	Manipur
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Engineered	#Other	#Mine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN164649 (>99% sequence identity) for Rhodococcus from Microbeatlas

Aquatic Samples	208
Soil Samples	428
Animal Samples	251
Plant Samples	65
Total Samples	952

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64745]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64745]	Rhodococcus canchipurensis strain MBRL 353 16S ribosomal RNA gene, partial sequence	JN164649	1522	GenBank ENA	1055466 tax ID

[Ref.: #64745]	GC-content	69.2 mol%
[Ref.: #67770]	GC-content	69.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #64745]

Culture collection no.

KCTC 19851, JCM 17578, DSM 46692, MBRL 353

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus olei sp. nov., with the ability to degrade petroleum oil, isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002750	2018	*
Phylogeny	Rhodococcus pedocola sp. nov. and Rhodococcus humicola sp. nov., two antibiotic-producing actinomycetes isolated from soil.	Nguyen TM, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001039	2016	*
Phylogeny	Rhodococcus canchipurensis sp. nov., an actinomycete isolated from a limestone deposit site.	Nimaichand S, Sanasam S, Zheng LQ, Zhu WY, Yang LL, Tang SK, Ningthoujam DS, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.036087-0	2012	*
Phylogeny	Rhodococcus gannanensis sp. nov., a novel endophytic actinobacterium isolated from root of sunflower (Helianthus annuus L.).	Ma J, Zhang L, Wang G, Zhang S, Zhang X, Wang Y, Shi C, Si L, Zhao H, Liu F, Zhang B, Huang X	Antonie Van Leeuwenhoek	10.1007/s10482-017-0884-9	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30437

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26773 (see below)

#64745

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46692

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26773

IJSEM 114 2013 ( DOI 10.1099/ijs.0.036087-0 , PubMed 22345137 )

* These data were automatically processed and therefore are not curated

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