Name: Rheinheimera longhuensis LH2-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133764

Type strain:

Species: Rheinheimera longhuensis

Strain Designation: LH2-2

Culture col. no.: CGMCC 1.7003, NBRC 105632

NCBI tax ID(s): 1091037 (species)

Section

Rheinheimera longhuensis LH2-2 is an aerobe, Gram-negative, motile bacterium that was isolated from freshwater .

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Rheinheimera*
	Species	**Rheinheimera longhuensis**
	Full Scientific Name (LPSN)	Rheinheimera longhuensis Liu et al. 2012

Synonym

"Alishewanella longhuensis"

Information on morphological and physiological properties Morphology

[Ref.: #30433]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.939

[Ref.: #30433]	Cell length	3 µm

[Ref.: #30433]	Cell width	0.4 µm

[Ref.: #30433]	Cell shape	rod-shaped

[Ref.: #30433]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.275

[Ref.: #30433]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30433]			growth	0-36 °C
[Ref.: #30433]			optimum	30 °C

[Ref.: #30433]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30433]			optimum	8.3
[Ref.: #30433]			growth	6.5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30433]

Oxygen tolerance

aerobe

[Ref.: #30433]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.954

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30433]		NaCl		growth	0-2	%
[Ref.: #30433]		NaCl		optimum	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30433]	asparagine ChEBI	+	carbon source
[Ref.: #30433]	cellobiose ChEBI	+	carbon source
[Ref.: #30433]	esculin ChEBI	+	hydrolysis
[Ref.: #30433]	fructose ChEBI	+	carbon source
[Ref.: #30433]	glucose ChEBI	+	carbon source
[Ref.: #30433]	glutamate ChEBI	+	carbon source
[Ref.: #30433]	glycogen ChEBI	+	carbon source
[Ref.: #30433]	malate ChEBI	+	carbon source
[Ref.: #30433]	maltose ChEBI	+	carbon source
[Ref.: #30433]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30433]	nitrate ChEBI	+	reduction
[Ref.: #30433]	sucrose ChEBI	+	carbon source
[Ref.: #30433]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30433]	acid phosphatase	+	3.1.3.2
[Ref.: #30433]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30433]	catalase	+	1.11.1.6
[Ref.: #30433]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30433]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30433]	Sample type/isolated from	freshwater (river, lake, pond)
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30433]	Rheinheimera longhuensis strain LH2-2 16S ribosomal RNA gene, partial sequence	EU183319	1488	GenBank	1091037 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alishewanella longhuensis CGMCC 1.7003	GCA_014653435	scaffold	GenBank	1091037 tax ID	*
[Ref.: #66792]	Alishewanella longhuensis strain CGMCC 1.7003	1091037.3	wgs	PATRIC	1091037 tax ID	*

[Ref.: #30433]

GC-content

47 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alishewanella longhuensis CGMCC 1.7003 NCBI: GCA_014653435.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alishewanella longhuensis CGMCC 1.7003 NCBI: GCA_014653435.1
[Ref.: #69480]	flagellated	yes	78.475	no
[Ref.: #69480]	gram-positive	no	99.133	yes
[Ref.: #69480]	anaerobic	no	94.705	no
[Ref.: #69480]	aerobic	yes	82.583	no
[Ref.: #69480]	halophile	no	88.975	yes
[Ref.: #69480]	spore-forming	no	94.659	yes
[Ref.: #69480]	thermophile	no	99.522	yes
[Ref.: #69480]	glucose-util	yes	88.172	yes
[Ref.: #69480]	motile	yes	90.613	no
[Ref.: #69480]	glucose-ferment	no	80.708	no

Availability in culture collections External links

[Ref.: #30433]

Culture collection no.

CGMCC 1.7003, NBRC 105632

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera tuosuensis sp. nov., isolated from a saline lake.	Zhong ZP, Liu Y, Liu LZ, Wang F, Zhou YG, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.056473-0	2014	*
Phylogeny	Rheinheimera longhuensis sp. nov., isolated from a slightly alkaline lake, and emended description of genus Rheinheimera Brettar et al. 2002.	Liu Y, Jiang JT, Xu CJ, Liu YH, Song XF, Li H, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.036020-0	2012	*
Phylogeny	Emended description of the family Chromatiaceae, phylogenetic analyses of the genera Alishewanella, Rheinheimera and Arsukibacterium, transfer of Rheinheimera longhuensis LH2-2(T) to the genus Alishewanella and description of Alishewanella alkalitolerans sp. nov. from Lonar Lake, India.	Sisinthy S, Chakraborty D, Adicherla H, Gundlapally SR	Antonie Van Leeuwenhoek	10.1007/s10482-017-0896-5	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30433

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26769 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26769

IJSEM 2927 2012 ( DOI 10.1099/ijs.0.036020-0 , PubMed 22268075 )

* These data were automatically processed and therefore are not curated

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Alishewanella longhuensis CGMCC 1.7003

Alishewanella longhuensis CGMCC 1.7003

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