Rheinheimera longhuensis (CGMCC 1.7003, NBRC 105632, LH2-2)

Name: Rheinheimera longhuensis (CGMCC 1.7003, NBRC 105632, LH2-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133764

Type strain

Strain Designation LH2-2

Culture col. no. CGMCC 1.7003 NBRC 105632 LH2-2

NCBI tax ID(s) 1091037

Special Collections Literature strains

Links

Rheinheimera longhuensis LH2-2 is an aerobe, Gram-negative, motile bacterium that was isolated from freshwater .

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131847

NBRC 105632

@ref 20215

Last LPSN update 2026-02-09 11:32:01

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Chromatiaceae

Genus Rheinheimera

Species Rheinheimera longhuensis

Full scientific name Rheinheimera longhuensis Liu et al. 2012

Synonyms (1)

"Alishewanella longhuensis"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30433	negative	3 µm	0.4 µm	rod-shaped
125438					90.383
125438	negative				99
125439	negative				99.8

Pigmentation

30433

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30433	positive	growth	0-36
30433	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
30433	positive	optimum	8.3
30433	positive	growth	6.5-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30433	aerobe
125439	obligate aerobe	95.8

Spore formation

@ref	Spore formation	Confidence
30433
125439		99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30433	NaCl	positive	growth	0-2 %
30433	NaCl	positive	optimum	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30433	22653 ChEBI	asparagine	+	carbon source
30433	17057 ChEBI	cellobiose	+	carbon source
30433	4853 ChEBI	esculin	+	hydrolysis
30433	28757 ChEBI	fructose	+	carbon source
30433	17234 ChEBI	glucose	+	carbon source
30433	29987 ChEBI	glutamate	+	carbon source
30433	28087 ChEBI	glycogen	+	carbon source
30433	25115 ChEBI	malate	+	carbon source
30433	17306 ChEBI	maltose	+	carbon source
30433	506227 ChEBI	N-acetylglucosamine	+	carbon source
30433	17632 ChEBI	nitrate	+	reduction
30433	17992 ChEBI	sucrose	+	carbon source
30433	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30433	acid phosphatase	+	3.1.3.2
30433	alkaline phosphatase	+	3.1.3.1
30433	catalase	+	1.11.1.6
30433	cytochrome oxidase	+	1.9.3.1
30433	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

Isolation

30433

Sample typefreshwater (river, lake, pond)

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465343v1 assembly for Alishewanella longhuensis CGMCC 1.7003	scaffold	GCA_014653435	1091037.3	2995103186	1091037	55.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30433	Rheinheimera longhuensis strain LH2-2 16S ribosomal RNA gene, partial sequence	EU183319	1488		1091037

GC content

30433

GC-content (mol%)47

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alishewanella longhuensis CGMCC 1.7003
NCBI: GCA_014653435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	85.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alishewanella longhuensis CGMCC 1.7003
NCBI: GCA_014653435.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	95.33	yes
125438	aerobic	aerobicⓘ	yes	69.48	no
125438	spore-forming	spore-formingⓘ	no	88.88	yes
125438	thermophilic	thermophileⓘ	no	97.28	yes
125438	flagellated	motile2+ⓘ	yes	90.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera tuosuensis sp. nov., isolated from a saline lake.	Zhong ZP, Liu Y, Liu LZ, Wang F, Zhou YG, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.056473-0	2014
Phylogeny	Rheinheimera longhuensis sp. nov., isolated from a slightly alkaline lake, and emended description of genus Rheinheimera Brettar et al. 2002.	Liu Y, Jiang JT, Xu CJ, Liu YH, Song XF, Li H, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.036020-0	2012
Phylogeny	Emended description of the family Chromatiaceae, phylogenetic analyses of the genera Alishewanella, Rheinheimera and Arsukibacterium, transfer of Rheinheimera longhuensis LH2-2(T) to the genus Alishewanella and description of Alishewanella alkalitolerans sp. nov. from Lonar Lake, India.	Sisinthy S, Chakraborty D, Adicherla H, Gundlapally SR	Antonie Van Leeuwenhoek	10.1007/s10482-017-0896-5	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26769	IJSEM 2927 2012 ( DOI 10.1099/ijs.0.036020-0 , PubMed 22268075 )
#30433	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26769
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rheinheimera longhuensis (CGMCC 1.7003, NBRC 105632, LH2-2)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014653435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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