Name: Pseudidiomarina aquimaris SW15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133757

Type strain:

Species: Pseudidiomarina aquimaris

Strain Designation: SW15

Culture col. no.: LMG 25374, BCRC 80083

NCBI tax ID(s): 641841 (species)

SI-ID 363670

LMG 25374, BCRC 80083

Section

Pseudidiomarina aquimaris SW15 is an aerobe, Gram-negative, motile bacterium that was isolated from Coral.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Pseudidiomarina*
	Species	**Pseudidiomarina aquimaris**
	Full Scientific Name (LPSN)	Pseudidiomarina aquimaris (Chen et al. 2012) Liu et al. 2019

Synonym

Idiomarina aquimaris

Information on morphological and physiological properties Morphology

[Ref.: #30417]	Gram stain	negative

[Ref.: #30417]	Cell length	1.6 µm

[Ref.: #30417]	Cell width	0.8 µm

[Ref.: #30417]	Cell shape	rod-shaped

[Ref.: #30417]	Motility	yes

[Ref.: #30417]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30417]			growth	10-45 °C
[Ref.: #30417]			optimum	25 °C

[Ref.: #30417]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30417]			optimum	7.5
[Ref.: #30417]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30417]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30417]		NaCl		growth	0.5-15	%
[Ref.: #30417]		NaCl		optimum	3.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30417]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30417]	acetate ChEBI	+	carbon source
[Ref.: #30417]	alanine ChEBI	+	carbon source
[Ref.: #30417]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30417]	asparagine ChEBI	+	carbon source
[Ref.: #30417]	aspartate ChEBI	+	carbon source
[Ref.: #30417]	esculin ChEBI	+	hydrolysis
[Ref.: #30417]	fructose ChEBI	+	carbon source
[Ref.: #30417]	fucose ChEBI	+	carbon source
[Ref.: #30417]	galactose ChEBI	+	carbon source
[Ref.: #30417]	gluconate ChEBI	+	carbon source
[Ref.: #30417]	glucose ChEBI	+	carbon source
[Ref.: #30417]	glutamate ChEBI	+	carbon source
[Ref.: #30417]	glycerol ChEBI	+	carbon source
[Ref.: #30417]	inosine ChEBI	+	carbon source
[Ref.: #30417]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30417]	nitrate ChEBI	+	reduction
[Ref.: #30417]	phenylalanine ChEBI	+	carbon source
[Ref.: #30417]	proline ChEBI	+	carbon source
[Ref.: #30417]	putrescine ChEBI	+	carbon source
[Ref.: #30417]	sucrose ChEBI	+	carbon source
[Ref.: #30417]	threonine ChEBI	+	carbon source
[Ref.: #30417]	trehalose ChEBI	+	carbon source
[Ref.: #30417]	tween 20 ChEBI	+	carbon source
[Ref.: #30417]	tween 60 ChEBI	+	carbon source
[Ref.: #30417]	tween 80 ChEBI	+	carbon source
[Ref.: #30417]	uridine ChEBI	+	carbon source
[Ref.: #30417]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30417]	acid phosphatase	+	3.1.3.2
[Ref.: #30417]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30417]	catalase	+	1.11.1.6
[Ref.: #30417]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30417]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30417]	Sample type/isolated from	Coral
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ906745 (>99% sequence identity) for Pseudidiomarina aquimaris subclade from Microbeatlas

Aquatic Samples	45
Soil Samples	2
Animal Samples	14
Plant Samples
Total Samples	61

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30417]	Idiomarina aquimaris strain SW15 16S ribosomal RNA gene, partial sequence	FJ906745	1430	GenBank	641841 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudidiomarina aquimaris SW15	GCA_003987395	contig	GenBank	641841 tax ID	*

[Ref.: #30417]

GC-content

51.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudidiomarina aquimaris SW15 NCBI: GCA_003987395.1
[Ref.: #69480]	motile	no	69.552	yes
[Ref.: #69480]	flagellated	no	97.478	no
[Ref.: #69480]	gram-positive	no	98.684	yes
[Ref.: #69480]	anaerobic	no	98.47	no
[Ref.: #69480]	aerobic	yes	84.094	yes
[Ref.: #69480]	halophile	yes	54.494	no
[Ref.: #69480]	spore-forming	no	97.63	no
[Ref.: #69480]	thermophile	no	99.575	yes
[Ref.: #69480]	glucose-util	yes	85.766	no
[Ref.: #69480]	glucose-ferment	no	79.307	no

Availability in culture collections External links

[Ref.: #30417]

Culture collection no.

LMG 25374, BCRC 80083

[Ref.: #91586]

SI-ID 363670

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Idiomarina aquimaris sp. nov., isolated from the reef-building coral Isopora palifera.	Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.035592-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30417

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26753 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91586

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363670.1 )

#26753

IJSEM 1536 2012 ( DOI 10.1099/ijs.0.035592-0 , PubMed 21856977 )

* These data were automatically processed and therefore are not curated

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