Microvirga lupini (LMG 26460, HAMBI 3236, Lut6)

Name: Microvirga lupini (LMG 26460, HAMBI 3236, Lut6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133752

Type strain

Strain Designation Lut6

Culture col. no. LMG 26460 HAMBI 3236 Lut6

NCBI tax ID(s) 420324

Special Collections Literature strains

Links

Microvirga lupini Lut6 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative rod-shaped aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 377737

LMG 26460,HAMBI 3236

@ref 20215

Last LPSN update 2026-02-09 11:32:01

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Methylobacteriaceae

Genus Microvirga

Species Microvirga lupini

Full scientific name Microvirga lupini Ardley et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30397	negative	1.6 µm	0.45 µm	rod-shaped
125439	negative				97.9
125438	negative				97.482

Pigmentation

30397

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30397	positive	growth	10-43
30397	positive	optimum	39

Culture pH

@ref	Ability	Type	PH	PH range
30397	positive	optimum	7.75
30397	positive	growth	5.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

30397

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
30397
125439		96.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30397	NaCl	positive	growth	0-1.5 %
30397	NaCl	positive	optimum	0.25 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30397	22599 ChEBI	arabinose	+	carbon source
30397	17057 ChEBI	cellobiose	+	carbon source
30397	16236 ChEBI	ethanol	+	carbon source
30397	28757 ChEBI	fructose	+	carbon source
30397	17234 ChEBI	glucose	+	carbon source
30397	17754 ChEBI	glycerol	+	carbon source
30397	30031 ChEBI	succinate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30397	catalase	+	1.11.1.6
30397	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Plants

Isolation

30397

Sample typeplant associated

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM51700v1 assembly for Microvirga lupini Lut6	scaffold	GCA_000517005	420324.3	2508501050	420324

GC content

30397

GC-content (mol%)61.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microvirga lupini Lut6
NCBI: GCA_000517005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.90	no
125439	motility	BacteriaNetⓘ	no	56.50	no
125439	gram_stain	BacteriaNetⓘ	negative	97.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	85.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microvirga lupini Lut6
NCBI: GCA_000517005.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	yes
125438	anaerobic	anaerobicⓘ	no	95.27	yes
125438	aerobic	aerobicⓘ	yes	83.84	yes
125438	spore-forming	spore-formingⓘ	no	88.81	yes
125438	thermophilic	thermophileⓘ	no	97.56	yes
125438	flagellated	motile2+ⓘ	yes	70.91	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phylogeny and Phylogeography of Rhizobial Symbionts Nodulating Legumes of the Tribe Genisteae.	Stepkowski T, Banasiewicz J, Granada CE, Andrews M, Passaglia LMP.	Genes (Basel)	10.3390/genes9030163	2018
Phylogeny	Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts.	Ardley JK, Parker MA, De Meyer SE, Trengove RD, O'Hara GW, Reeve WG, Yates RJ, Dilworth MJ, Willems A, Howieson JG	Int J Syst Evol Microbiol	10.1099/ijs.0.035097-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26734	IJSEM 2579 2012 ( DOI 10.1099/ijs.0.035097-0 , PubMed 22199210 )
#30397	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26734
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microvirga lupini (LMG 26460, HAMBI 3236, Lut6)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000517005

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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