Name: Dehalococcoides mccartyi 195
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133751

Type strain:

Species: Dehalococcoides mccartyi

Strain Designation: 195

Culture col. no.: ATCC BAA-2266, KCTC 15142

Strain history: <- Stephen Zinder, Cornell Univ., USA

NCBI tax ID(s): 61435 (species)

Section

Dehalococcoides mccartyi 195 is an anaerobe, Gram-variable, ovoid-shaped bacterium that was isolated from bioreactor.

Gram-variable
ovoid-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chloroflexota*
	Class	*Dehalococcoidia*
	Order	*Dehalococcoidales*
	Family	*Dehalococcoidaceae*
	Genus	*Dehalococcoides*
	Species	**Dehalococcoides mccartyi**
	Full Scientific Name (LPSN)	Dehalococcoides mccartyi Löffler et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30391]	Gram stain	variable
[Ref.: #67771]	Gram stain	negative

[Ref.: #30391]	Cell length	0.65 µm

[Ref.: #30391]	Cell width	0.15 µm

[Ref.: #30391]	Cell shape	ovoid-shaped

[Ref.: #30391]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #30391]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30391]	growth	15-35 °C
[Ref.: #30391]	optimum	27.5 °C
[Ref.: #67771]	growth	30-35 °C

[Ref.: #30391]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30391]			optimum	7
[Ref.: #30391]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30391]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #30391]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30391]	Sample type/isolated from	bioreactor

[Ref.: #67771]	Sample type/isolated from	From anaerobic reactor seeded with digester sludge from a wastewater treatment plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ithaca
[Ref.: #67771]	Country	USA
[Ref.: #67771]	Country ISO 3 Code	USA
[Ref.: #67771]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered

#Bioreactor

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_074116 (>99% sequence identity) for Dehalococcoides mccartyi subclade from Microbeatlas

Aquatic Samples	681
Soil Samples	357
Animal Samples	90
Plant Samples	27
Total Samples	1155

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Dehalococcoides ethenogenes 16S ribosomal RNA gene, partial sequence	AF004928	1434	ENA	243164 tax ID
[Ref.: #67771]	Dehalococcoides mccartyi 195 16S ribosomal RNA, partial sequence	NR_074116	1435	GenBank	243164 tax ID
[Ref.: #67771]	Dehalococcoides mccartyi 195 16S ribosomal RNA, partial sequence	NR_114415	1434	GenBank	243164 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Dehalococcoides mccartyi 195	GCA_000011905	complete	GenBank	243164 tax ID
[Ref.: #66792]	Dehalococcoides mccartyi 195	637000089	complete	JGI IMG/M	243164 tax ID	*

[Ref.: #30391]	GC-content	47.95 mol%
[Ref.: #67771]	GC-content	47.0-48.9 mol%

Availability in culture collections External links

[Ref.: #30391]

Culture collection no.

ATCC BAA-2266, KCTC 15142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.	Loffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, Muller JA, Fullerton H, Zinder SH, Spormann AM	Int J Syst Evol Microbiol	10.1099/ijs.0.034926-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30391

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26728 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26728

IJSEM 625 2013 ( DOI 10.1099/ijs.0.034926-0 , PubMed 22544797 )

* These data were automatically processed and therefore are not curated

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