Skermanella stibiiresistens (CGMCC 1.10751, KCTC 23364, SB22)

Name: Skermanella stibiiresistens (CGMCC 1.10751, KCTC 23364, SB22)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133736

Type strain

Strain Designation SB22

Culture col. no. CGMCC 1.10751 KCTC 23364 SB22

NCBI tax ID(s) 913326

Special Collections KCTC Literature strains

Links

Skermanella stibiiresistens SB22 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26659

KCTC 23364

@ref 20215

Last LPSN update 2026-05-29 08:38:10

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Azospirillaceae

Genus Skermanella

Species Skermanella stibiiresistens

Full scientific name Skermanella stibiiresistens Luo et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
30338	negative	rod-shaped
125438	negative		97.476
125439	negative		91.675

Pigmentation

30338

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30338	positive	growth	04-37
30338	positive	optimum	28

Culture pH

@ref	Ability	Type	PH	PH range
30338	positive	optimum	7
30338	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30338	aerobe
125439	obligate aerobe	96.61

Spore formation

@ref	Spore formation	Confidence
125439		99.367

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30338	NaCl	positive	growth	0-4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30338	37054 ChEBI	3-hydroxybutyrate	+	carbon source
30338	16449 ChEBI	alanine	+	carbon source
30338	17234 ChEBI	glucose	+	carbon source
30338	24996 ChEBI	lactate	+	carbon source
30338	25115 ChEBI	malate	+	carbon source
30338	26271 ChEBI	proline	+	carbon source
30338	26546 ChEBI	rhamnose	+	carbon source
30338	33942 ChEBI	ribose	+	carbon source
30338	17814 ChEBI	salicin	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30338	catalase	+	1.11.1.6
30338	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

30338

Sample typesoil

Taxonmaps

69479

Global distribution of 16S sequence HQ315828 (>99% sequence identity) for Skermanella stibiiresistens subclade from Microbeatlas

Aquatic Samples	20
Soil Samples	237
Animal Samples	118
Plant Samples	37
Total Samples	412

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	genome assembly for Skermanella stibiiresistens SB22	contig	GCA_000576635	1385369.3	2590828654	1385369	38.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30338	Skermanella stibiiresistens SB22 16S ribosomal RNA gene, partial sequence	HQ315828	1420		1385369

GC content

30338

GC-content (mol%)69.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: genome assembly for Skermanella stibiiresistens SB22
BV-BRC: 1385369.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.61	no
125439	gram_stain	BacteriaNetⓘ	negative	91.68	no
125439	motility	BacteriaNetⓘ	yes	60.35	no
125439	spore_formation	BacteriaNetⓘ	no	99.37	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Skermanella stibiiresistens SB22
PATRIC: 1385369.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	yes
125438	anaerobic	anaerobicⓘ	no	87.98	yes
125438	spore-forming	spore-formingⓘ	no	85.90	no
125438	aerobic	aerobicⓘ	yes	81.02	yes
125438	thermophilic	thermophileⓘ	no	97.44	yes
125438	flagellated	motile2+ⓘ	yes	78.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Skermanella stibiiresistens sp. nov., a highly antimony-resistant bacterium isolated from coal-mining soil, and emended description of the genus Skermanella.	Luo G, Shi Z, Wang H, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.033746-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26679	IJSEM 1271 2012 ( DOI 10.1099/ijs.0.033746-0 , PubMed 21784960 )
#30338	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26679
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Skermanella stibiiresistens (CGMCC 1.10751, KCTC 23364, SB22)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000576635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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