Name: Aquimarina mytili PSC33
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133725

Type strain:

Species: Aquimarina mytili

Strain Designation: PSC33

Culture col. no.: KCTC 23302, JCM 17454

Strain history: <- Chi Nam Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 874423 (species)

Special Collections

Section

Aquimarina mytili PSC33 is an aerobe, Gram-negative, motile bacterium that was isolated from Mussel.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aquimarina*
	Species	**Aquimarina mytili**
	Full Scientific Name (LPSN)	Aquimarina mytili Park et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30295]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #30295]	Cell length	2.1 µm

[Ref.: #30295]	Cell width	0.35 µm

[Ref.: #30295]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30295]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %92.5

[Ref.: #30295]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #30295]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30295]	growth	15-37 °C
[Ref.: #30295]	optimum	27.5 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25-30 °C

	pH	Kind of pH		pH
[Ref.: #30295]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30295]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %90.617

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30295]		NaCl		growth	1-4	%
[Ref.: #30295]		NaCl		optimum	2	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30295]		esculin ChEBI	+	hydrolysis
[Ref.: #30295]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #30295]	acid phosphatase	+	3.1.3.2
[Ref.: #30295]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30295]	catalase	+	1.11.1.6
[Ref.: #30295]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30295]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30295]	Sample type/isolated from	Mussel

[Ref.: #67770]	Sample type/isolated from	Mussel Mytilus coruscus
[Ref.: #67770]	Host species	Mytilus coruscus
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From gut content obtained from a mussel, `Mytilus coruscus`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Gwangyang Bay in the South Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	34.8833°/127.7670°
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM998910 (>99% sequence identity) for Aquimarina mytili subclade from Microbeatlas

Aquatic Samples	87
Soil Samples
Animal Samples	1
Plant Samples	1
Total Samples	89

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30295]	Aquimarina mytili strain PSC33 16S ribosomal RNA gene, partial sequence	HM998910	1429	GenBank ENA	874423 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aquimarina mytili KCTC 23302	GCA_016735115	contig	GenBank ENA	874423 tax ID	*
[Ref.: #66792]	Aquimarina mytili strain KCTC 23302	874423.3	wgs	PATRIC	874423 tax ID	*

[Ref.: #67771]

GC-content

37.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aquimarina mytili strain KCTC 23302 PATRIC: 874423.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aquimarina mytili strain KCTC 23302 PATRIC: 874423.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.796	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.617	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.446	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.406	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	yes

Availability in culture collections External links

[Ref.: #30295]

Culture collection no.

KCTC 23302, JCM 17454

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri.	Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.041509-0	2012	*
Phylogeny	Aquimarina spongiicola sp. nov., isolated from spongin.	Choi KD, Lee GE, Park JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002575	2018	*
Phylogeny	Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina macrocephali.	Park SC, Choe HN, Baik KS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.032904-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30295

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26636 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26636

IJSEM 1974 2012 ( DOI 10.1099/ijs.0.032904-0 , PubMed 22003036 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Aquimarina mytili in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Aquimarina mytili strain KCTC 23302

Aquimarina mytili strain KCTC 23302

Change proposal

Change proposal