Algoriphagus namhaensis (KCTC 23419, CCUG 60523, DPG-3)

Name: Algoriphagus namhaensis (KCTC 23419, CCUG 60523, DPG-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133701

Type strain

Strain Designation DPG-3

Culture col. no. KCTC 23419 CCUG 60523 DPG-3

NCBI tax ID(s) 915353

Special Collections CCUG KCTC Literature strains

History KCTC <- Jung-Hoon Yoon, KRIBB

Links

Algoriphagus namhaensis DPG-3 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411877

KCTC 23419,CCUG 60523

@ref 20215

Last LPSN update 2026-05-29 08:38:09

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus namhaensis

Full scientific name Algoriphagus namhaensis Oh et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30208	negative	01-05 µm	0.2-0.4 µm	rod-shaped
67771				rod-shaped
67771	negative
125439	negative				99.568

Colony morphology

62339

Incubation period2 days

Pigmentation

30208

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30208	positive	growth	10-40
30208	positive	optimum	30
62339	positive	growth	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
30208	positive	optimum	7-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30208	aerobe
62339	aerobe
67771	aerobe
125439	obligate aerobe	95.412

Spore formation

@ref	Spore formation	Confidence
30208
125439		99.912

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30208	NaCl	positive	growth	0.5-6 %
30208	NaCl	positive	optimum	2 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30208	28757 ChEBI	fructose	+	carbon source
30208	53424 ChEBI	tween 20	+	carbon source
30208	53423 ChEBI	tween 40	+	carbon source
30208	53425 ChEBI	tween 60	+	carbon source
30208	53426 ChEBI	tween 80	+	carbon source
30208	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
30208	seawater
62339	Seawater	2009	Geoje	Republic of Korea	KOR	Asia
67771	From seawater		Geojedo, the South Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ401024 (>99% sequence identity) for Algoriphagus namhaensis subclade from Microbeatlas

Aquatic Samples	2685
Soil Samples	84
Animal Samples	233
Plant Samples	49
Total Samples	3051

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4264970v1 assembly for Algoriphagus namhaensis CCUG 60523	contig	GCA_042649705	915353	71.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30208	Algoriphagus namhaensis strain DPG-3 16S ribosomal RNA gene, partial sequence	HQ401024	1444		915353

GC content

30208

GC-content (mol%)44.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4264970v1 assembly for Algoriphagus namhaensis CCUG 60523
NCBI: GCA_042649705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	99.57	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.41	no
125439	motility	BacteriaNetⓘ	no	76.55	no
125439	spore_formation	BacteriaNetⓘ	no	99.91	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus namhaensis sp. nov., isolated from seawater.	Oh KH, Kang SJ, Lee SY, Park S, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.030791-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26553	IJSEM 575 2012 ( DOI 10.1099/ijs.0.030791-0 , PubMed 21515706 )
#30208	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26553
#62339	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60523
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algoriphagus namhaensis (KCTC 23419, CCUG 60523, DPG-3)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042649705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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