Name: Muricauda aquimarina SW-63
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133699

Type strain:

Species: Muricauda aquimarina

Strain Designation: SW-63

Culture col. no.: KCCM 41646, JCM 11811, CIP 108790

Strain history: CIP <- 2005, JCM <- 2002, J. H. Yoon: strain SW-63

NCBI tax ID(s): 254955 (species)

SI-ID 138995

JCM 11811, CIP 108790

Section

Muricauda aquimarina SW-63 is a Gram-negative, rod-shaped bacterium that was isolated from Salt lake near Hwajinpo Beach.

Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	Muricauda
	Species	Muricauda aquimarina
	Full Scientific Name (LPSN)	Muricauda aquimarina Yoon et al. 2005

Synonym

Allomuricauda aquimarina

Information on morphological and physiological properties Morphology

[Ref.: #30192]	Gram stain	negative
[Ref.: #116452]	Gram stain	negative

[Ref.: #30192]	Cell length	4.25 µm

[Ref.: #30192]	Cell width	0.35 µm

[Ref.: #30192]	Cell shape	rod-shaped
[Ref.: #116452]	Cell shape	rod-shaped

[Ref.: #30192]	Motility	no
[Ref.: #116452]	Motility	no

[Ref.: #116452]	Pigment production	no
[Ref.: #116452]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38313]

Culture medium

Marine agar (MA)

[Ref.: #38313]

Culture medium growth

[Ref.: #38313]

Culture medium composition

expand / minimize

[Ref.: #116452]

Culture medium

CIP Medium 13

[Ref.: #116452]

Culture medium growth

[Ref.: #116452]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #30192]		growth	10-44 °C
[Ref.: #30192]		optimum	33.5 °C
[Ref.: #38313]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #116452]		growth	15-41 °C
[Ref.: #116452]	no	growth	5 °C
[Ref.: #116452]	no	growth	45 °C

[Ref.: #30192]	Temperature range	mesophilic
[Ref.: #38313]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116452]	Temperature range	psychrophilic
[Ref.: #116452]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30192]			optimum	7
[Ref.: #30192]			growth	5.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30192]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #30192]	NaCl		growth	0.1-9.0	%
[Ref.: #30192]	NaCl		optimum	2	%
[Ref.: #116452]	NaCl	no	growth	0	%
[Ref.: #116452]	NaCl	no	growth	2	%
[Ref.: #116452]	NaCl	no	growth	4	%
[Ref.: #116452]	NaCl	no	growth	6	%
[Ref.: #116452]	NaCl	no	growth	8	%
[Ref.: #116452]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30192]	cellobiose ChEBI	+	carbon source
[Ref.: #30192]	esculin ChEBI	+	hydrolysis
[Ref.: #116452]	esculin ChEBI	-	hydrolysis
[Ref.: #30192]	fructose ChEBI	+	carbon source
[Ref.: #30192]	glucose ChEBI	+	carbon source
[Ref.: #116452]	hippurate ChEBI	+	hydrolysis
[Ref.: #30192]	lactose ChEBI	+	carbon source
[Ref.: #116452]	malonate ChEBI	-	assimilation
[Ref.: #30192]	maltose ChEBI	+	carbon source
[Ref.: #30192]	mannose ChEBI	+	carbon source
[Ref.: #30192]	melibiose ChEBI	+	carbon source
[Ref.: #116452]	nitrate ChEBI	-	reduction
[Ref.: #116452]	nitrate ChEBI	-	respiration
[Ref.: #116452]	nitrite ChEBI	-	reduction
[Ref.: #30192]	raffinose ChEBI	+	carbon source
[Ref.: #30192]	succinate ChEBI	+	carbon source
[Ref.: #30192]	sucrose ChEBI	+	carbon source
[Ref.: #30192]	trehalose ChEBI	+	carbon source
[Ref.: #30192]	tween 20 ChEBI	+	carbon source
[Ref.: #30192]	tween 40 ChEBI	+	carbon source
[Ref.: #30192]	tween 60 ChEBI	+	carbon source
[Ref.: #30192]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116452]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116452]		acetoin ChEBI	-
[Ref.: #116452]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116452]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116452]	amylase	+
[Ref.: #116452]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116452]	caseinase	-	3.4.21.50
[Ref.: #30192]	catalase	+	1.11.1.6
[Ref.: #116452]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30192]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116452]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116452]	gelatinase	+/-
[Ref.: #116452]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116452]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116452]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116452]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116452]	oxidase	-
[Ref.: #116452]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #116452]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116452]	tryptophan deaminase	-
[Ref.: #116452]	tween esterase	+
[Ref.: #116452]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116452]	11460	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Salt lake near Hwajinpo Beach
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #116452]	Sample type/isolated from	Environment, Salt lake
[Ref.: #116452]	Geographic location (country and/or sea, region)	Near Hwajinpo Beach of the East Sea
[Ref.: #116452]	Country	Republic of Korea
[Ref.: #116452]	Country ISO 3 Code	KOR
[Ref.: #116452]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AY445075 (>99% sequence identity) for Muricauda from Microbeatlas

Aquatic Samples	106
Soil Samples	4
Animal Samples	4
Plant Samples
Total Samples	114

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #116452]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30192]	Muricauda aquimarina strain SW-63 16S ribosomal RNA gene, partial sequence	AY445075	1481	GenBank	254955 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allomuricauda aquimarina JCM11811	GCA_003992675	scaffold	GenBank	254955 tax ID	*
[Ref.: #66792]	Muricauda aquimarina strain JCM11811	254955.3	wgs	PATRIC	254955 tax ID	*
[Ref.: #66792]	Muricauda aquimarina JCM11811	2894665668	draft	JGI IMG/M	254955 tax ID	*

[Ref.: #30192]	GC-content	44.1 mol%
[Ref.: #67770]	GC-content	44.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Muricauda aquimarina JCM11811 NCBI: GCA_003992675.1
[Ref.: #69480]	motile	no	92.197	yes
[Ref.: #69480]	flagellated	no	96.366	yes
[Ref.: #69480]	gram-positive	no	98.337	yes
[Ref.: #69480]	anaerobic	no	99.008	no
[Ref.: #69480]	aerobic	yes	81.705	no
[Ref.: #69480]	halophile	no	76.32	no
[Ref.: #69480]	spore-forming	no	97.092	no
[Ref.: #69480]	thermophile	no	95.824	yes
[Ref.: #69480]	glucose-util	yes	89.026	no
[Ref.: #69480]	glucose-ferment	no	89.084	no

Availability in culture collections External links

[Ref.: #30192]

Culture collection no.

KCCM 41646, JCM 11811, CIP 108790

[Ref.: #91565]

SI-ID 138995

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda aurea sp. nov. and Muricauda profundi sp. nov., two marine bacteria isolated from deep sea sediment of Pacific Ocean.	Zhao S, Liu R, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005217	2022	*
Phylogeny	Muricauda maritima sp. nov., Muricauda aequoris sp. nov. and Muricauda oceanensis sp. nov., three marine bacteria isolated from seawater.	Guo LL, Wu D, Sun C, Cheng H, Xu XW, Wu M, Wu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004522	2020	*
Phylogeny	Muricauda oceani sp. nov., isolated from the East Pacific Ocean.	Dong B, Zhu S, Chen T, Ren N, Chen X, Chen Y, Xue Z, Shen X, Huang Y, Yang J, Chen J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004241	2020	*
Phylogeny	Muricauda alvinocaridis sp. nov., isolated from shrimp gill from the Okinawa Trough.	Liu L, Yu M, Zhou S, Fu T, Sun W, Wang L, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003953	2020	*
Phylogeny	Muricauda antarctica sp. nov., a marine member of the Flavobacteriaceae isolated from Antarctic seawater.	Wu YH, Yu PS, Zhou YD, Xu L, Wang CS, Wu M, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.048355-0	2013	*
Phylogeny	Muricauda taeanensis sp. nov., isolated from a marine tidal flat.	Kim JM, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.047647-0	2013	*
Phylogeny	Muricauda flavescens sp. nov. and Muricauda aquimarina sp. nov., isolated from a salt lake near Hwajinpo Beach of the East Sea in Korea, and emended description of the genus Muricauda.	Yoon JH, Lee MH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.03051-0	2005	*
Phylogeny	Muricauda amphidinii sp. nov., a novel marine bacterium isolated from the phycosphere of dinoflagellate Amphidinium carterae.	Chen Y, Hu Z, Wang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004764	2021	*
Metabolism	Zeaxanthin production by novel marine isolates from coastal sand of India and its antioxidant properties.	Prabhu S, Rekha PD, Young CC, Hameed A, Lin SY, Arun AB	Appl Biochem Biotechnol	10.1007/s12010-013-0397-6	2013	*
Phylogeny	Muricauda zhangzhouensis sp. nov., isolated from mangrove sediment.	Yang C, Li Y, Guo Q, Lai Q, Wei J, Zheng T, Tian Y	Int J Syst Evol Microbiol	10.1099/ijs.0.040881-0	2012	*
Phylogeny	Muricauda olearia sp. nov., isolated from crude-oil-contaminated seawater, and emended description of the genus Muricauda.	Hwang CY, Kim MH, Bae GD, Zhang GI, Kim YH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.007708-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30192

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26538 (see below)

#38313 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91565

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138995.1 )

#116452 Collection of Institut Pasteur ; Curators of the CIP; CIP 108790

#26538

IJSEM 1015 2005 ( DOI 10.1099/ijs.0.03051-0 , PubMed 15879227 )

* These data were automatically processed and therefore are not curated

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Muricauda aquimarina JCM11811

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