Flagellimonas marinaquae (KCCM 41646, JCM 11811, SW-63)

Name: Flagellimonas marinaquae (KCCM 41646, JCM 11811, SW-63)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133699

Type strain

Strain Designation SW-63

Culture col. no. KCCM 41646 JCM 11811 SW-63 CIP 108790

NCBI tax ID(s) 254955

Special Collections JCM CIP Literature strains

History J.-H. Yoon SW-63. CIP <- 2005, JCM <- 2002, J. H. Yoon: strain SW-63

Links

Flagellimonas marinaquae SW-63 is a Gram-negative, rod-shaped bacterium that was isolated from Salt lake near Hwajinpo Beach.

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 138995

JCM 11811,CIP 108790

@ref 20215

Last LPSN update 2026-02-09 11:32:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flagellimonas

Species Flagellimonas marinaquae

Full scientific name Flagellimonas marinaquae Molinari Novoa et al. 2024

Synonyms (2)

Allomuricauda aquimarina
Muricauda aquimarina

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30192	negative	4.25 µm	0.35 µm	rod-shaped
125438					94.667
125438	negative				97.5
125439	negative				99.7
116452	negative			rod-shaped

Colony morphology

Pigmentation

@ref	Production	Name
116452		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38313	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
116452	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
30192	positive	growth	10-44
30192	positive	optimum	33.5
38313	positive	growth	30
67770	positive	growth	30
116452	positive	growth	15-41
116452	negative	growth	5
116452	negative	growth	45

Culture pH

@ref	Ability	Type	PH
30192	positive	optimum	7
30192	positive	growth	5.0-7.0

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
30192
125438		91.833
125439		99.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30192	NaCl	positive	growth	0.1-9.0 %
30192	NaCl	positive	optimum	2 %
116452	NaCl		growth	0 %
116452	NaCl		growth	2 %
116452	NaCl		growth	4 %
116452	NaCl		growth	6 %
116452	NaCl		growth	8 %
116452	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30192	17057 ChEBI	cellobiose	+	carbon source
30192	4853 ChEBI	esculin	+	hydrolysis
116452	4853 ChEBI	esculin	-	hydrolysis
30192	28757 ChEBI	fructose	+	carbon source
30192	17234 ChEBI	glucose	+	carbon source
116452	606565 ChEBI	hippurate	+	hydrolysis
30192	17716 ChEBI	lactose	+	carbon source
116452	15792 ChEBI	malonate	-	assimilation
30192	17306 ChEBI	maltose	+	carbon source
30192	37684 ChEBI	mannose	+	carbon source
30192	28053 ChEBI	melibiose	+	carbon source
116452	17632 ChEBI	nitrate	-	reduction
116452	17632 ChEBI	nitrate	-	respiration
116452	16301 ChEBI	nitrite	-	reduction
30192	16634 ChEBI	raffinose	+	carbon source
30192	30031 ChEBI	succinate	+	carbon source
30192	17992 ChEBI	sucrose	+	carbon source
30192	27082 ChEBI	trehalose	+	carbon source
30192	53424 ChEBI	tween 20	+	carbon source
30192	53423 ChEBI	tween 40	+	carbon source
30192	53425 ChEBI	tween 60	+	carbon source
30192	53426 ChEBI	tween 80	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116452	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
116452	15688 ChEBI	acetoin	-
116452	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116452	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116452	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
116452	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116452	caseinase	-	3.4.21.50
30192	catalase	+	1.11.1.6
116452	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
30192	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116452	gamma-glutamyltransferase	+	2.3.2.2
116452	gelatinase	+/-
116452	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
116452	lipase	-
68382	lipase (C 14)	-		from API zym
116452	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116452	ornithine decarboxylase	-	4.1.1.17
116452	oxidase	-
116452	phenylalanine ammonia-lyase	-	4.3.1.24
116452	protease	-
68382	trypsin	+	3.4.21.4	from API zym
116452	tryptophan deaminase	-
116452	tween esterase	+
116452	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116452	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Salt lake near Hwajinpo Beach		Republic of Korea	KOR	Asia
116452	Environment, Salt lake	Near Hwajinpo Beach of the East Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY445075 (>99% sequence identity) for Muricauda from Microbeatlas

Aquatic Samples	106
Soil Samples	4
Animal Samples	4
Plant Samples
Total Samples	114

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
116452	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM399267v1 assembly for Flagellimonas marinaquae JCM11811	scaffold	GCA_003992675	254955.3	2894665668	254955	72.7

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30192	Muricauda aquimarina strain SW-63 16S ribosomal RNA gene, partial sequence	AY445075	1481		254955

GC content

@ref	GC-content (mol%)	Method
30192	44.1
67770	44.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allomuricauda aquimarina JCM11811
NCBI: GCA_003992675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	no	74.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Muricauda aquimarina JCM11811
NCBI: GCA_003992675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	yes
125438	anaerobic	anaerobicⓘ	no	97.74	no
125438	aerobic	aerobicⓘ	yes	88.23	no
125438	spore-forming	spore-formingⓘ	no	91.83	yes
125438	thermophilic	thermophileⓘ	no	99.97	yes
125438	flagellated	motile2+ⓘ	no	94.67	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Zeaxanthin production by novel marine isolates from coastal sand of India and its antioxidant properties.	Prabhu S, Rekha PD, Young CC, Hameed A, Lin SY, Arun AB	Appl Biochem Biotechnol	10.1007/s12010-013-0397-6	2013
	Muricauda abyssi sp. nov., a marine bacterium isolated from deep seawater of the Mariana Trench.	Wang D, Wu Y, Liu Y, Liu B, Gao Y, Yang Y, Zhang Y, Liu C, Huo Y, Tang A, Xu Y, Wei Y.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005615	2022
Phylogeny	Muricauda aurea sp. nov. and Muricauda profundi sp. nov., two marine bacteria isolated from deep sea sediment of Pacific Ocean.	Zhao S, Liu R, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005217	2022
Phylogeny	Muricauda maritima sp. nov., Muricauda aequoris sp. nov. and Muricauda oceanensis sp. nov., three marine bacteria isolated from seawater.	Guo LL, Wu D, Sun C, Cheng H, Xu XW, Wu M, Wu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004522	2020
Phylogeny	Muricauda oceani sp. nov., isolated from the East Pacific Ocean.	Dong B, Zhu S, Chen T, Ren N, Chen X, Chen Y, Xue Z, Shen X, Huang Y, Yang J, Chen J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004241	2020
Phylogeny	Muricauda alvinocaridis sp. nov., isolated from shrimp gill from the Okinawa Trough.	Liu L, Yu M, Zhou S, Fu T, Sun W, Wang L, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003953	2020
Phylogeny	Muricauda antarctica sp. nov., a marine member of the Flavobacteriaceae isolated from Antarctic seawater.	Wu YH, Yu PS, Zhou YD, Xu L, Wang CS, Wu M, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.048355-0	2013
Phylogeny	Muricauda taeanensis sp. nov., isolated from a marine tidal flat.	Kim JM, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.047647-0	2013
Phylogeny	Muricauda flavescens sp. nov. and Muricauda aquimarina sp. nov., isolated from a salt lake near Hwajinpo Beach of the East Sea in Korea, and emended description of the genus Muricauda.	Yoon JH, Lee MH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.03051-0	2005
Phylogeny	Muricauda amphidinii sp. nov., a novel marine bacterium isolated from the phycosphere of dinoflagellate Amphidinium carterae.	Chen Y, Hu Z, Wang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004764	2021
Phylogeny	Muricauda zhangzhouensis sp. nov., isolated from mangrove sediment.	Yang C, Li Y, Guo Q, Lai Q, Wei J, Zheng T, Tian Y	Int J Syst Evol Microbiol	10.1099/ijs.0.040881-0	2012
Phylogeny	Muricauda olearia sp. nov., isolated from crude-oil-contaminated seawater, and emended description of the genus Muricauda.	Hwang CY, Kim MH, Bae GD, Zhang GI, Kim YH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.007708-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26538	IJSEM 1015 2005 ( DOI 10.1099/ijs.0.03051-0 , PubMed 15879227 )
#30192	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26538
#38313	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116452	Collection of Institut Pasteur ; Curators of the CIP; CIP 108790
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flagellimonas marinaquae (KCCM 41646, JCM 11811, SW-63)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003992675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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