Name: Lutibacter aestuarii MA-My1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133694

Type strain:

Species: Lutibacter aestuarii

Strain Designation: MA-My1

Culture col. no.: KCTC 23499, CCUG 60022

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 861111 (species)

SI-ID 410698

CCUG 60022

Special Collections

Section

When using BacDive for research please cite our paper

Lutibacter aestuarii MA-My1 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Lutibacter*
	Species	**Lutibacter aestuarii**
	Full Scientific Name (LPSN)	Lutibacter aestuarii Lee et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30179]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30179]	Cell length	1.0-4.0 µm

[Ref.: #30179]	Cell width	0.2-0.4 µm

[Ref.: #30179]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30179]	Motility	no

[Ref.: #62185]

Incubation period

1 day

[Ref.: #30179]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30179]	growth	04-37 °C
[Ref.: #30179]	optimum	30 °C
[Ref.: #62185]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30179]			optimum	7.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30179]	Oxygen tolerance	facultative anaerobe
[Ref.: #62185]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30179]		NaCl		growth	0-6	%
[Ref.: #30179]		NaCl		optimum	2.0-3.0	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30179]	maltose ChEBI	+	carbon source
[Ref.: #30179]	mannose ChEBI	+	carbon source
[Ref.: #30179]	trehalose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30179]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30179]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30179]		catalase	+	1.11.1.6
[Ref.: #30179]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30179]	Sample type/isolated from	marine sediment

[Ref.: #62185]	Sample type/isolated from	Tidal flat sediment
[Ref.: #62185]	Sampling date	2009
[Ref.: #62185]	Geographic location (country and/or sea, region)	South Sea
[Ref.: #62185]	Country	Republic of Korea
[Ref.: #62185]	Country ISO 3 Code	KOR
[Ref.: #62185]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Mokpo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM234096 (>99% sequence identity) for Lutibacter aestuarii subclade from Microbeatlas

Aquatic Samples	2176
Soil Samples	24
Animal Samples	31
Plant Samples	14
Total Samples	2245

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30179]	Lutibacter aestuarii strain MA-My1 16S ribosomal RNA gene, partial sequence	HM234096	1443	GenBank ENA	861111 tax ID

[Ref.: #30179]

GC-content

30.6 mol%

Availability in culture collections External links

[Ref.: #30179]

Culture collection no.

KCTC 23499, CCUG 60022

[Ref.: #91560]

SI-ID 410698

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lutibacter aestuarii sp. nov., isolated from a tidal flat sediment, and emended description of the genus Lutibacter Choi and Cho 2006.	Lee SY, Lee MH, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.030320-0	2011	*
Phylogeny	Wenyingzhuangia marina gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a recirculating mariculture system.	Liu Y, Liu LZ, Liu HC, Zhou YG, Qi FJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.055012-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30179

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26528 (see below)

#62185 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60022
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91560

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410698.1 )

#26528

IJSEM 420 2012 ( DOI 10.1099/ijs.0.030320-0 , PubMed 21460139 )

* These data were automatically processed and therefore are not curated

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