Tenacibaculum geojense (KCTC 23423, CCUG 60527, YCS-6)

Name: Tenacibaculum geojense (KCTC 23423, CCUG 60527, YCS-6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133678

Type strain

Strain Designation YCS-6

Culture col. no. KCTC 23423 CCUG 60527 YCS-6

NCBI tax ID(s) 915352

Special Collections CCUG KCTC Literature strains

Links

Tenacibaculum geojense YCS-6 is an aerobe, Gram-negative, motile prokaryote that was isolated from seawater.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 408589

KCTC 23423,CCUG 60527

@ref 20215

Last LPSN update 2025-12-16 10:01:51

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Tenacibaculum

Species Tenacibaculum geojense

Full scientific name Tenacibaculum geojense Kang et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
30124	negative	1.0-9.0 µm	0.2-0.4 µm	rod-shaped		gliding

Colony morphology

62343

Incubation period1 day

Pigmentation

30124

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30124	positive	growth	15-40
30124	positive	optimum	30	mesophilic
62343	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
30124	positive	optimum	7.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30124	aerobe
62343	aerobe

Spore formation

30124

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30124	NaCl	positive	growth	0-7 %
30124	NaCl	positive	optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30124	4853 ChEBI	esculin	+	hydrolysis
30124	17234 ChEBI	glucose	+	carbon source
30124	17306 ChEBI	maltose	+	carbon source
30124	17992 ChEBI	sucrose	+	carbon source
30124	53424 ChEBI	tween 20	+	carbon source
30124	53423 ChEBI	tween 40	+	carbon source
30124	53425 ChEBI	tween 60	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30124	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
30124	seawater
62343	Seawater	2009	Geoje,South Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ401023 (>99% sequence identity) for Tenacibaculum geojense subclade from Microbeatlas

Aquatic Samples	552
Soil Samples	4
Animal Samples	52
Plant Samples	4
Total Samples	612

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267600v1 assembly for Tenacibaculum geojense CCUG 60527	scaffold	GCA_042676005	915352	46.68

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30124	Tenacibaculum geojense strain YCS-6 16S ribosomal RNA gene, partial sequence	HQ401023	1442		915352

GC content

30124

GC-content (mol%)32.7

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenacibaculum xiamenense sp. nov., an algicidal bacterium isolated from coastal seawater.	Li Y, Wei J, Yang C, Lai Q, Chen Z, Li D, Zhang H, Tian Y, Zheng W, Zheng T	Int J Syst Evol Microbiol	10.1099/ijs.0.050765-0	2013
Phylogeny	Tenacibaculum geojense sp. nov., isolated from seawater.	Kang SJ, Lee SY, Lee MH, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.029702-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30124	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26478 (see below)
#62343	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60527
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tenacibaculum geojense (KCTC 23423, CCUG 60527, YCS-6)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042676005

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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