Tropicimonas aquimaris (KCTC 23424, CCUG 60524, DPG-21)

Name: Tropicimonas aquimaris (KCTC 23424, CCUG 60524, DPG-21)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133676

Type strain

Strain Designation DPG-21

Culture col. no. KCTC 23424 CCUG 60524 DPG-21

NCBI tax ID(s) 914152

Special Collections CCUG KCTC Literature strains

Links

Tropicimonas aquimaris DPG-21 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 412138

KCTC 23424,CCUG 60524

@ref 20215

Last LPSN update 2025-12-16 10:01:51

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Tropicimonas

Species Tropicimonas aquimaris

Full scientific name Tropicimonas aquimaris Oh et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30097	negative	1.2-15.0 µm	0.8-1.2 µm	rod-shaped
67771	negative

Colony morphology

62340

Incubation period3 days

Pigmentation

30097

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30097	positive	growth	15-40
30097	positive	optimum	30
62340	positive	growth	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
30097	positive	optimum	07-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30097	aerobe
62340	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30097	NaCl	positive	optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30097	17632 ChEBI	nitrate	+	reduction
30097	26546 ChEBI	rhamnose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30097	alkaline phosphatase	+	3.1.3.1
30097	alpha-galactosidase	+	3.2.1.22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type
30097	seawater
62340	Seawater
67771	From seawater

Taxonmaps

69479

Global distribution of 16S sequence HQ340608 (>99% sequence identity) for Tropicimonas aquimaris from Microbeatlas

Aquatic Samples	440
Soil Samples	3
Animal Samples	31
Plant Samples	4
Total Samples	478

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267618v1 assembly for Tropicimonas aquimaris CCUG 60524	scaffold	GCA_042676185	914152	64.69

Genome browser: GCA_042676185

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30097	Tropicimonas aquimaris strain DPG-21 16S ribosomal RNA gene, partial sequence	HQ340608	1390		914152

GC content

30097

GC-content (mol%)69.6

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maritimibacter lacisalsi sp. nov., isolated from a salt lake, and emended description of the genus Maritimibacter Lee et al. 2007.	Zhong ZP, Liu Y, Zhou YG, Liu HC, Wang F, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000437	2015
Phylogeny	Tropicimonas aquimaris sp. nov., isolated from seawater, and emended description of the genus Tropicimonas Harwati et al. 2009.	Oh KH, Choi WC, Jung YT, Kang SJ, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.029371-0	2011
Phylogeny	Tropicimonas sediminicola sp. nov., isolated from marine sediment.	Shin NR, Roh SW, Kim MS, Yun B, Whon TW, Kim YO, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.037929-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30097	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26453 (see below)
#62340	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60524
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tropicimonas aquimaris (KCTC 23424, CCUG 60524, DPG-21)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042676185

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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