Name: Tropicimonas aquimaris DPG-21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133676

Type strain:

Species: Tropicimonas aquimaris

Strain Designation: DPG-21

Culture col. no.: KCTC 23424, CCUG 60524

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 914152 (species)

Section

Tropicimonas aquimaris DPG-21 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Tropicimonas*
	Species	**Tropicimonas aquimaris**
	Full Scientific Name (LPSN)	Tropicimonas aquimaris Oh et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30097]	Gram stain	negative
[Ref.: #30097]	Cell length	1.2-15.0 µm
[Ref.: #30097]	Cell width	0.8-1.2 µm
[Ref.: #30097]	Cell shape	rod-shaped
[Ref.: #30097]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #62340]

Incubation period

3 days

[Ref.: #30097]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30097]	growth	15-40 °C
[Ref.: #30097]	optimum	30 °C
[Ref.: #62340]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #30097]	Temperature range	mesophilic
[Ref.: #62340]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30097]			optimum	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30097]	Oxygen tolerance	aerobe
[Ref.: #62340]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30097]		NaCl		optimum	2	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30097]		nitrate ChEBI	+	reduction
[Ref.: #30097]		rhamnose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30097]		alkaline phosphatase	+	3.1.3.1
[Ref.: #30097]		alpha-galactosidase	+	3.2.1.22

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30097]	Sample type/isolated from	seawater

[Ref.: #62340]	Sample type/isolated from	Seawater
[Ref.: #62340]	Sampling date	2009
[Ref.: #62340]	Geographic location (country and/or sea, region)	Geoje,South Sea
[Ref.: #62340]	Country	Republic of Korea
[Ref.: #62340]	Country ISO 3 Code	KOR
[Ref.: #62340]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Geoje-do
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ340608 (>99% sequence identity) for Tropicimonas aquimaris from Microbeatlas

Aquatic Samples	440
Soil Samples	3
Animal Samples	31
Plant Samples	4
Total Samples	478

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30097]	Tropicimonas aquimaris strain DPG-21 16S ribosomal RNA gene, partial sequence	HQ340608	1390	GenBank	914152 tax ID

[Ref.: #30097]

GC-content

69.6 mol%

Availability in culture collections External links

[Ref.: #30097]

Culture collection no.

KCTC 23424, CCUG 60524

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maritimibacter lacisalsi sp. nov., isolated from a salt lake, and emended description of the genus Maritimibacter Lee et al. 2007.	Zhong ZP, Liu Y, Zhou YG, Liu HC, Wang F, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000437	2015	*
Phylogeny	Tropicimonas aquimaris sp. nov., isolated from seawater, and emended description of the genus Tropicimonas Harwati et al. 2009.	Oh KH, Choi WC, Jung YT, Kang SJ, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.029371-0	2011	*
Phylogeny	Tropicimonas sediminicola sp. nov., isolated from marine sediment.	Shin NR, Roh SW, Kim MS, Yun B, Whon TW, Kim YO, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.037929-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30097

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26453 (see below)

#62340 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60524
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26453

IJSEM 688 2012 ( DOI 10.1099/ijs.0.029371-0 , PubMed 21551334 )

* These data were automatically processed and therefore are not curated

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