Microbulbifer marinus (CGMCC 1.10657, JCM 17211, Y215)

Name: Microbulbifer marinus (CGMCC 1.10657, JCM 17211, Y215)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133655

Type strain

Strain Designation Y215

Culture col. no. CGMCC 1.10657 JCM 17211 Y215

NCBI tax ID(s) 658218

Special Collections JCM Literature strains

History D.-S. Zhang Y215.

Links

Microbulbifer marinus Y215 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132254

JCM 17211

@ref 20215

Last LPSN update 2026-02-09 11:32:00

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Microbulbiferaceae

Genus Microbulbifer

Species Microbulbifer marinus

Full scientific name Microbulbifer marinus Zhang et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29975	negative	2.5-5.0 µm	0.3-0.5 µm	rod-shaped
125438	negative				98.5
125439	negative				99.9

Pigmentation

29975

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29975	positive	growth	15-40
29975	positive	optimum	25-30
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
29975	positive	optimum	07-08
29975	positive	growth	4.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29975	aerobe
125439	aerobe	92.7

Spore formation

@ref	Spore formation	Confidence
125438		95.313
125439		98.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29975	NaCl	positive	growth	0-7 %
29975	NaCl	positive	optimum	2-3 %

Observation

67770

Observationquinones: Q-8, Q-7, Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29975	30089 ChEBI	acetate	+	carbon source
29975	16449 ChEBI	alanine	+	carbon source
29975	29016 ChEBI	arginine	+	carbon source
29975	4853 ChEBI	esculin	+	hydrolysis
29975	17234 ChEBI	glucose	+	carbon source
29975	29987 ChEBI	glutamate	+	carbon source
29975	27570 ChEBI	histidine	+	carbon source
29975	25115 ChEBI	malate	+	carbon source
29975	17306 ChEBI	maltose	+	carbon source
29975	17632 ChEBI	nitrate	+	reduction
29975	18257 ChEBI	ornithine	+	carbon source
29975	17272 ChEBI	propionate	+	carbon source
29975	15361 ChEBI	pyruvate	+	carbon source
29975	17822 ChEBI	serine	+	carbon source
29975	30031 ChEBI	succinate	+	carbon source
29975	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29975	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
29975	marine sediment
67770	Marine sediment sample from Yueqing Bay	Zhejiang Province	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2667527380 annotated assembly for Microbulbifer marinus CGMCC 1.10657	scaffold	GCA_900107725	658218.4	2667527380	658218	77.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29975	Microbulbifer marinus strain Y215 16S ribosomal RNA gene, partial sequence	GQ262812	1497		658218

GC content

@ref	GC-content (mol%)	Method
29975	54
67770	54	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbulbifer marinus CGMCC 1.10657
NCBI: GCA_900107725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	88.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbulbifer marinus strain CGMCC 1.10657
PATRIC: 658218.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	95.73	yes
125438	spore-forming	spore-formingⓘ	no	95.31	no
125438	aerobic	aerobicⓘ	yes	75.06	no
125438	thermophilic	thermophileⓘ	no	96.75	yes
125438	flagellated	motile2+ⓘ	no	73.17	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbulbifer marinus sp. nov. and Microbulbifer yueqingensis sp. nov., isolated from marine sediment.	Zhang DS, Huo YY, Xu XW, Wu YH, Wang CS, Xu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.027714-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26343	IJSEM 505 2012 ( DOI 10.1099/ijs.0.027714-0 , PubMed 21478393 )
#29975	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26343
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbulbifer marinus (CGMCC 1.10657, JCM 17211, Y215)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900107725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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