Name: Allobacillus halotolerans B3A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133636

Type strain:

Species: Allobacillus halotolerans

Strain Designation: B3A

Culture col. no.: BCRC 17939, LMG 24826

NCBI tax ID(s): 570278 (species)

Section

Allobacillus halotolerans B3A is an aerobe, spore-forming, Gram-positive bacterium that was isolated from food product.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Allobacillus*
	Species	**Allobacillus halotolerans**
	Full Scientific Name (LPSN)	Allobacillus halotolerans Sheu et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29871]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29871]	Cell length	2.5 µm

[Ref.: #29871]	Cell width	0.6 µm

[Ref.: #29871]	Cell shape	rod-shaped

[Ref.: #29871]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.538

[Ref.: #29871]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29871]			growth	20-45 °C
[Ref.: #29871]			optimum	37 °C

[Ref.: #29871]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29871]			optimum	7
[Ref.: #29871]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29871]

Oxygen tolerance

aerobe

[Ref.: #29871]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.447

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29871]		NaCl		optimum	6	%

[Ref.: #29871]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29871]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #29871]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #29871]	alanine ChEBI	+	carbon source
[Ref.: #29871]	fructose ChEBI	+	carbon source
[Ref.: #29871]	glucose ChEBI	+	carbon source
[Ref.: #29871]	glycerol ChEBI	+	carbon source
[Ref.: #29871]	lactate ChEBI	+	carbon source
[Ref.: #29871]	lactose ChEBI	+	carbon source
[Ref.: #29871]	maltose ChEBI	+	carbon source
[Ref.: #29871]	mannose ChEBI	+	carbon source
[Ref.: #29871]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29871]	pyruvate ChEBI	+	carbon source
[Ref.: #29871]	ribose ChEBI	+	carbon source
[Ref.: #29871]	serine ChEBI	+	carbon source
[Ref.: #29871]	sucrose ChEBI	+	carbon source
[Ref.: #29871]	thymidine ChEBI	+	carbon source
[Ref.: #29871]	trehalose ChEBI	+	carbon source
[Ref.: #29871]	tween 40 ChEBI	+	carbon source
[Ref.: #29871]	tween 80 ChEBI	+	carbon source
[Ref.: #29871]	uridine ChEBI	+	carbon source
[Ref.: #29871]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29871]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29871]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29871]	catalase	+	1.11.1.6
[Ref.: #29871]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29871]	Sample type/isolated from	food product
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ347755 (>99% sequence identity) for Allobacillus halotolerans subclade from Microbeatlas

Aquatic Samples	288
Soil Samples	589
Animal Samples	711
Plant Samples	195
Total Samples	1783

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29871]	Allobacillus halotolerans strain B3A 16S ribosomal RNA gene, partial sequence	FJ347755	1431	GenBank	570278 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allobacillus halotolerans LMG 24826	GCA_018967645	scaffold	GenBank	570278 tax ID	*
[Ref.: #66792]	Allobacillus halotolerans strain LMG 24826	570278.4	wgs	PATRIC	570278 tax ID	*
[Ref.: #66792]	Allobacillus halotolerans BCRC 17939	GCA_028743495	complete	GenBank	570278 tax ID	*

[Ref.: #29871]

GC-content

45.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Allobacillus halotolerans LMG 24826 NCBI: GCA_018967645.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Allobacillus halotolerans BCRC 17939 NCBI: GCA_028743495.1
[Ref.: #69480]	motile	yes	89.044	yes
[Ref.: #69480]	flagellated	no	51.409	no
[Ref.: #69480]	gram-positive	yes	89.547	yes
[Ref.: #69480]	anaerobic	no	98.341	yes
[Ref.: #69480]	aerobic	yes	93.27	yes
[Ref.: #69480]	halophile	yes	93.95	yes
[Ref.: #69480]	spore-forming	yes	95.234	yes
[Ref.: #69480]	glucose-ferment	no	91.242	no
[Ref.: #69480]	thermophile	no	93.64	yes
[Ref.: #69480]	glucose-util	yes	85.333	yes

Availability in culture collections External links

[Ref.: #29871]

Culture collection no.

BCRC 17939, LMG 24826

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allobacillus halotolerans gen. nov., sp. nov. isolated from shrimp paste.	Sheu SY, Arun AB, Jiang SR, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.023341-0	2010	*
Phylogeny	Allobacillus salarius sp. nov., and Allobacillus saliphilus sp. nov., isolated from shrimp paste (ka-pi) in Thailand.	Yiamsombut S, Kanchanasin P, Phongsopitanun W, Kuncharoen N, Savarajara A, Shi W, Wu L, Ma J, Tanasupawat S	Arch Microbiol	10.1007/s00203-021-02694-9	2021	*
Genetics	Draft genome sequencing data of the moderately halophilic bacterium, Allobacillus halotolerans SKP2-8 from shrimp paste (ka-pi).	Kingkaew E, Yiamsombut S, Poothong S, Shi W, Wu L, Ma J, Tanasupawat S	Data Brief	10.1016/j.dib.2022.108549	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29871

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26245 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26245

IJSEM 1023 2011 ( DOI 10.1099/ijs.0.023341-0 , PubMed 20511460 )

* These data were automatically processed and therefore are not curated

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Allobacillus halotolerans LMG 24826

Allobacillus halotolerans BCRC 17939

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