Name: Euzebyella saccharophila 7SM30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133614

Type strain:

Species: Euzebyella saccharophila

Strain Designation: 7SM30

Culture col. no.: CECT 7477, KCTC 22655, CIP 109943

Strain history: CIP <- 2009, CECT

NCBI tax ID(s): 679664 (species)

SI-ID 371222

CECT 7477, KCTC 22655, CIP 109943

Other strains from Euzebyella saccharophila

E. saccharophila

Section

Euzebyella saccharophila 7SM30 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Euzebyella*
	Species	**Euzebyella saccharophila**
	Full Scientific Name (LPSN)	Euzebyella saccharophila Lucena et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29783]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #36853]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #29783]	Cell length	1.4-5 µm

[Ref.: #29783]	Cell width	0.4 µm

[Ref.: #29783]	Cell shape	rod-shaped
[Ref.: #36853]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29783]	Motility	no
[Ref.: #36853]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #29783]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36853]

Culture medium

Marine agar (MA)

[Ref.: #36853]

Culture medium growth

[Ref.: #36853]

Culture medium composition

expand / minimize

[Ref.: #36853]

Culture medium

CIP Medium 13

[Ref.: #36853]

Culture medium growth

[Ref.: #36853]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #29783]	growth	15-37 °C
[Ref.: #29783]	optimum	26-28 °C
[Ref.: #36853]	growth	25 °C
[Ref.: #67771]	growth	26 °C

[Ref.: #29783]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29783]			optimum	7
[Ref.: #29783]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29783]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #36853]	Oxygen tolerance	obligate aerobe

[Ref.: #29783]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

[Ref.: #29783]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29783]	arabinose ChEBI	+	carbon source
[Ref.: #29783]	fructose ChEBI	+	carbon source
[Ref.: #29783]	galactose ChEBI	+	carbon source
[Ref.: #29783]	glucose ChEBI	+	carbon source
[Ref.: #29783]	lactose ChEBI	+	carbon source
[Ref.: #29783]	maltose ChEBI	+	carbon source
[Ref.: #29783]	mannose ChEBI	+	carbon source
[Ref.: #29783]	melibiose ChEBI	+	carbon source
[Ref.: #36853]	nitrate ChEBI	-	reduction
[Ref.: #36853]	nitrite ChEBI	-	reduction
[Ref.: #29783]	rhamnose ChEBI	+	carbon source
[Ref.: #29783]	salicin ChEBI	+	carbon source
[Ref.: #29783]	sucrose ChEBI	+	carbon source
[Ref.: #29783]	trehalose ChEBI	+	carbon source
[Ref.: #29783]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #36853]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29783]	catalase	+	1.11.1.6
[Ref.: #36853]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29783]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #36853]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #36853]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #36853]	12239	-	+	-	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29783]	Sample type/isolated from	seawater

[Ref.: #67771]	Sample type/isolated from	From surface seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	off the western Mediterranean coast in Vinaroz
[Ref.: #67771]	Country	Spain
[Ref.: #67771]	Country ISO 3 Code	ESP
[Ref.: #67771]	Continent	Europe

[Ref.: #36853]	Sample type/isolated from	Environment, Sea water, surface
[Ref.: #36853]	Geographic location (country and/or sea, region)	Vinaroz
[Ref.: #36853]	Country	Spain
[Ref.: #36853]	Country ISO 3 Code	ESP
[Ref.: #36853]	Continent	Europe
[Ref.: #36853]	Isolation date	1989

[Ref.: #36853]	Geographic location (country and/or sea, region)	Vinaroz
[Ref.: #36853]	Country	Spain
[Ref.: #36853]	Country ISO 3 Code	ESP
[Ref.: #36853]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN554868 (>99% sequence identity) for Euzebyella saccharophila subclade from Microbeatlas

Aquatic Samples	644
Soil Samples	8
Animal Samples	117
Plant Samples	7
Total Samples	776

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36853]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29783]	Euzebyella saccharophila partial 16S rRNA gene, type strain 7SM30T	FN554868	1450	GenBank	679664 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Euzebyella saccharophila 7SM30	GCA_014855495	contig	GenBank	679664 tax ID	*
[Ref.: #66792]	Euzebyella saccharophila strain 7SM30	679664.3	wgs	PATRIC	679664 tax ID	*

[Ref.: #29783]	GC-content	40 mol%
[Ref.: #67771]	GC-content	41.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	39.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Euzebyella saccharophila strain 7SM30 PATRIC: 679664.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Euzebyella saccharophila strain 7SM30 PATRIC: 679664.3
[Ref.: #69480]	gram-positive	no	97.947	yes
[Ref.: #69480]	anaerobic	no	99.482	yes
[Ref.: #69480]	halophile	no	62.16	no
[Ref.: #69480]	spore-forming	no	95.872	no
[Ref.: #69480]	glucose-util	yes	88.051	yes
[Ref.: #69480]	flagellated	no	95.695	yes
[Ref.: #69480]	thermophile	no	99.625	yes
[Ref.: #69480]	motile	no	89.977	yes
[Ref.: #69480]	aerobic	yes	91.05	yes
[Ref.: #69480]	glucose-ferment	no	90.516	no

Availability in culture collections External links

[Ref.: #29783]

Culture collection no.

CECT 7477, KCTC 22655, CIP 109943

[Ref.: #91526]

SI-ID 371222

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Euzebyella saccharophila gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae.	Lucena T, Pascual J, Giordano A, Gambacorta A, Garay E, Arahal DR, Macian MC, Pujalte MJ	Int J Syst Evol Microbiol	10.1099/ijs.0.020875-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29783

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26163 (see below)

#36853 Collection of Institut Pasteur ; Curators of the CIP; CIP 109943

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91526

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371222.1 )

#26163

IJSEM 2871 2010 ( DOI 10.1099/ijs.0.020875-0 , PubMed 20081010 )

* These data were automatically processed and therefore are not curated

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Euzebyella saccharophila strain 7SM30

Euzebyella saccharophila strain 7SM30

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