Name: Halopelagius inordinatus RO5-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133592

Type strain:

Species: Halopelagius inordinatus

Strain Designation: RO5-2

Culture col. no.: CGMCC 1.7739, JCM 15773

Strain history: H.-L. Cui RO5-2.

NCBI tax ID(s): 553467 (species)

Section

Halopelagius inordinatus RO5-2 is an aerobe, Gram-negative, motile archaeon that was isolated from marine solar saltern.

Gram-negative
motile
ovoid-shaped
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Halopelagius*
	Species	**Halopelagius inordinatus**
	Full Scientific Name (LPSN)	Halopelagius inordinatus Cui et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29678]	Gram stain	negative

[Ref.: #29678]	Cell shape	ovoid-shaped

[Ref.: #29678]	Motility	yes

[Ref.: #29678]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29678]	growth	20-50 °C
[Ref.: #29678]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #29678]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29678]			optimum	6.5-7
[Ref.: #29678]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29678]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29678]		NaCl		growth	15-28	%
[Ref.: #29678]		NaCl		optimum	20-22	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29678]	acetate ChEBI	+	carbon source
[Ref.: #29678]	alanine ChEBI	+	carbon source
[Ref.: #29678]	fructose ChEBI	+	carbon source
[Ref.: #29678]	galactose ChEBI	+	carbon source
[Ref.: #29678]	glucose ChEBI	+	carbon source
[Ref.: #29678]	glutamate ChEBI	+	carbon source
[Ref.: #29678]	glycerol ChEBI	+	carbon source
[Ref.: #29678]	lactate ChEBI	+	carbon source
[Ref.: #29678]	lactose ChEBI	+	carbon source
[Ref.: #29678]	malate ChEBI	+	carbon source
[Ref.: #29678]	maltose ChEBI	+	carbon source
[Ref.: #29678]	mannose ChEBI	+	carbon source
[Ref.: #29678]	ornithine ChEBI	+	carbon source
[Ref.: #29678]	sorbitol ChEBI	+	carbon source
[Ref.: #29678]	succinate ChEBI	+	carbon source
[Ref.: #29678]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29678]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29678]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29678]		catalase	+	1.11.1.6
[Ref.: #29678]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29678]	Sample type/isolated from	marine solar saltern

[Ref.: #67770]	Sample type/isolated from	Rudong solar saltern
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU887284 (>99% sequence identity) for Halopelagius inordinatus from Microbeatlas

Aquatic Samples	70
Soil Samples	116
Animal Samples	15
Plant Samples
Total Samples	201

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29678]	Halobacteriaceae archaeon RO5-2 16S ribosomal RNA gene, complete sequence	EU887284	1472	GenBank	553467 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halopelagius inordinatus CGMCC 1.7739	GCA_900113245	contig	GenBank	553467 tax ID
[Ref.: #66792]	Halopelagius inordinatus CGMCC 1.7739	2617270917	draft	JGI IMG/M	553467 tax ID	*
[Ref.: #66792]	Halopelagius inordinatus strain CGMCC 1.7739	553467.4	wgs	PATRIC	553467 tax ID	*

[Ref.: #29678]	GC-content	61 mol%
[Ref.: #67770]	GC-content	61 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #29678]

Culture collection no.

CGMCC 1.7739, JCM 15773

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halopelagius longus sp. nov., a member of the family Halobacteriaceae isolated from a salt mine, and emended description of the genus Halopelagius.	Zhang X, Zhang WY, Shen AH, Huo YY, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.051375-0	2013	*
Phylogeny	Halopelagius fulvigenes sp. nov., a halophilic archaeon isolated from a lake.	Liu BB, Tang SK, Cui HL, Zhang YG, Li L, Zhang YM, Zhang LL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.045773-0	2012	*
Phylogeny	Halopelagius inordinatus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern.	Cui HL, Li XY, Gao X, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.018598-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29678

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26063 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26063

IJSEM 2089 2010 ( DOI 10.1099/ijs.0.018598-0 , PubMed 19854878 )

* These data were automatically processed and therefore are not curated

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