Haloplanus vescus (CGMCC 1.8712, JCM 16055, RO5-8)

Name: Haloplanus vescus (CGMCC 1.8712, JCM 16055, RO5-8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133591

Type strain

Strain Designation RO5-8

Culture col. no. CGMCC 1.8712 JCM 16055 RO5-8

NCBI tax ID(s) 555874

Special Collections JCM Literature strains

History H.-L. Cui RO5-8.

Links

Haloplanus vescus RO5-8 is an aerobe, Gram-negative, rod-shaped archaeon that was isolated from Marine solar saltern.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 132622

JCM 16055

@ref 20215

Last LPSN update 2026-02-09 11:31:59

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloplanus

Species Haloplanus vescus

Full scientific name Haloplanus vescus Cui et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape
29677	negative	1.5 µm	rod-shaped

Pigmentation

29677

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29677	positive	growth	30-50
29677	positive	optimum	40
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
29677	positive	optimum	6.25
29677	positive	growth	5.5-7.5

Physiology and metabolism

Oxygen tolerance

29677

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		94.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29677	NaCl	positive	growth	15.08-24.94 %
29677	NaCl	positive	optimum	17.98 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29677	30089 ChEBI	acetate	+	carbon source
29677	17234 ChEBI	glucose	+	carbon source
29677	24996 ChEBI	lactate	+	carbon source
29677	17716 ChEBI	lactose	+	carbon source
29677	17306 ChEBI	maltose	+	carbon source
29677	29864 ChEBI	mannitol	+	carbon source
29677	37684 ChEBI	mannose	+	carbon source
29677	17632 ChEBI	nitrate	+	reduction
29677	15361 ChEBI	pyruvate	+	carbon source
29677	30911 ChEBI	sorbitol	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29677	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29677	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
29677	catalase	+	1.11.1.6
29677	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	factor 420 biosynthesis	100	5 of 5
66794	cyanate degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	flavin biosynthesis	93.33	14 of 15
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	pantothenate biosynthesis	83.33	5 of 6
66794	methylglyoxal degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	3-chlorocatechol degradation	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	phenylalanine metabolism	76.92	10 of 13
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	vitamin B12 metabolism	73.53	25 of 34
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	photosynthesis	71.43	10 of 14
66794	propionate fermentation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	purine metabolism	67.02	63 of 94
66794	serine metabolism	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	non-pathway related	63.16	24 of 38
66794	ketogluconate metabolism	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	histidine metabolism	62.07	18 of 29
66794	NAD metabolism	61.11	11 of 18
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	alanine metabolism	58.62	17 of 29
66794	arginine metabolism	58.33	14 of 24
66794	lipid metabolism	58.06	18 of 31
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	glutathione metabolism	57.14	8 of 14
66794	tyrosine metabolism	57.14	8 of 14
66794	nitrate assimilation	55.56	5 of 9
66794	proline metabolism	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	tryptophan metabolism	52.63	20 of 38
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	ethanol fermentation	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	degradation of sugar alcohols	50	8 of 16
66794	tetrahydrofolate metabolism	50	7 of 14
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	pentose phosphate pathway	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	d-mannose degradation	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	mevalonate metabolism	42.86	3 of 7
66794	oxidative phosphorylation	41.76	38 of 91
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	phenol degradation	40	8 of 20
66794	lipoate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	starch degradation	40	4 of 10
66794	urea cycle	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	cholesterol biosynthesis	36.36	4 of 11
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	methanogenesis from CO2	33.33	4 of 12
66794	arachidonic acid metabolism	33.33	6 of 18
66794	isoprenoid biosynthesis	30.77	8 of 26
66794	coenzyme M biosynthesis	30	3 of 10
66794	degradation of pentoses	28.57	8 of 28
66794	degradation of sugar acids	28	7 of 25
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	biotin biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	vitamin E metabolism	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	degradation of hexoses	22.22	4 of 18
66794	polyamine pathway	21.74	5 of 23

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
29677	Marine solar saltern
67770	Disused marine solar saltern in Jiangsu	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU931578 (>99% sequence identity) for Haloplanus vescus subclade from Microbeatlas

Aquatic Samples	4
Soil Samples	2
Animal Samples	7
Plant Samples
Total Samples	13

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2617270898 annotated assembly for Haloplanus vescus CGMCC 1.8712	scaffold	GCA_900107665	555874.3	2617270898	555874	75.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29677	Haloplanus sp. RO5-8 16S ribosomal RNA gene, complete sequence	EU931578	1472		555874
124043	Haloplanus vescus gene for 16S rRNA, complete sequence, strain: JCM 16055.	AB663397	1472		555874

GC content

@ref	GC-content (mol%)	Method
29677	62.1
67770	62.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haloplanus vescus CGMCC 1.8712
NCBI: GCA_900107665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.30	no
125439	motility	BacteriaNetⓘ	yes	56.60	no
125439	gram_stain	BacteriaNetⓘ	negative	80.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	61.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus salinarum sp. nov., an extremely halophilic archaeon isolated from a solar saltern.	Hwang HB, Kim YE, Koh HW, Song HS, Roh SW, Kim SJ, Nam SW, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002313	2017
Phylogeny	Haloplanus litoreus sp. nov. and Haloplanus ruber sp. nov., from a marine solar saltern and an aquaculture farm, respectively.	Han D, Cui HL	Antonie Van Leeuwenhoek	10.1007/s10482-014-0123-6	2014
Phylogeny	Haloplanus salinus sp. nov., an extremely halophilic archaeon from a Chinese marine solar saltern.	Qiu XX, Zhao ML, Han D, Zhang WJ, Cui HL	Arch Microbiol	10.1007/s00203-013-0929-z	2013
Phylogeny	Haloplanus aerogenes sp. nov., an extremely halophilic archaeon from a marine solar saltern.	Cui HL, Gao X, Yang X, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.025023-0	2010
Phylogeny	Haloplanus vescus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haloplanus.	Cui HL, Gao X, Li XY, Xu XW, Zhou YG, Liu HC, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.018564-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26062	IJSEM 1824 2010 ( DOI 10.1099/ijs.0.018564-0 , PubMed 19767368 )
#29677	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26062
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloplanus vescus (CGMCC 1.8712, JCM 16055, RO5-8)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900107665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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