Name: Sphingobacterium shayense HS39
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133590

Type strain:

Species: Sphingobacterium shayense

Strain Designation: HS39

Culture col. no.: CCTCC AB 209006, NRRL B-59203

NCBI tax ID(s): 626343 (species)

Section

Sphingobacterium shayense HS39 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium shayense**
	Full Scientific Name (LPSN)	Sphingobacterium shayense He et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29673]	Gram stain	negative

[Ref.: #29673]	Cell length	1-1.5 µm

[Ref.: #29673]	Cell width	0.6-0.8 µm

[Ref.: #29673]	Cell shape	rod-shaped

[Ref.: #29673]	Motility	no

[Ref.: #29673]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29673]			growth	10-40 °C
[Ref.: #29673]			optimum	30-37 °C

[Ref.: #29673]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29673]			optimum	6.5-8
[Ref.: #29673]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29673]

Oxygen tolerance

aerobe

[Ref.: #29673]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29673]		NaCl		growth	0-5	%
[Ref.: #29673]		NaCl		optimum	0-3	%

[Ref.: #29673]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29673]	glucose ChEBI	+	carbon source
[Ref.: #29673]	histidine ChEBI	+	carbon source
[Ref.: #29673]	L-arabitol ChEBI	+	carbon source
[Ref.: #29673]	maltose ChEBI	+	carbon source
[Ref.: #29673]	melibiose ChEBI	+	carbon source
[Ref.: #29673]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29673]	rhamnose ChEBI	+	carbon source
[Ref.: #29673]	salicin ChEBI	+	carbon source
[Ref.: #29673]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29673]	acid phosphatase	+	3.1.3.2
[Ref.: #29673]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29673]	catalase	+	1.11.1.6
[Ref.: #29673]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29673]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ816788 (>99% sequence identity) for Sphingobacterium shayense subclade from Microbeatlas

Aquatic Samples	127
Soil Samples	584
Animal Samples	365
Plant Samples	209
Total Samples	1285

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29673]	Sphingobacterium shayense strain HS39 16S ribosomal RNA gene, partial sequence	FJ816788	1440	GenBank	626343 tax ID

[Ref.: #29673]

GC-content

40.2 mol%

Availability in culture collections External links

[Ref.: #29673]

Culture collection no.

CCTCC AB 209006, NRRL B-59203

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium shayense sp. nov., isolated from forest soil.	He X, Xiao T, Kuang H, Lan X, Tudahong M, Osman G, Fang C, Rahman E	Int J Syst Evol Microbiol	10.1099/ijs.0.018481-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29673

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26059 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26059

IJSEM 2377 2010 ( DOI 10.1099/ijs.0.018481-0 , PubMed 19933581 )

* These data were automatically processed and therefore are not curated

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