Pseudonocardia thermophila (DSM 43027, CBS 350.63, IFO 12133)

Name: Pseudonocardia thermophila (DSM 43027, CBS 350.63, IFO 12133)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13358

Type strain

Culture col. no. DSM 43027 CBS 350.63 IFO 12133 KCC A-0032 NBRC 12133 6 more

NCBI tax ID(s) 1848

Special Collections DSMZ JCM KCTC

History DSMZ <- KCC <- CBS <- C.L. Fergus, 14 JCM <-- KCC A-0032 <-- CBS 350.63 <-- C. L. Fergus No. 14.

Links

Pseudonocardia thermophila DSM 43027 is a bacterium that was isolated from mushroom compost.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 88630

DSM 43027,IFO 12133,JCM 3032,CBS 350.63,AS 4.1051,KCTC 9149,KCTC 9295,KACC 20023,CGMCC 4.1051,NBRC 12133

@ref 20215

Last LPSN update 2026-05-29 08:28:01

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species Pseudonocardia thermophila

Full scientific name Pseudonocardia thermophila Henssen 1957 (Approved Lists 1980)

BacDive ID	Other strains from **Pseudonocardia thermophila** (1)	Type strain
13359	P. thermophila DSM 43832, ATCC 19285, CBS 277.66, IAM 14290, ... (type strain)

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10698	BHI-GLUCOSE MEDIUM (DSMZ Medium 82)		Medium recipe at MediaDive	Name: BHI-GLUCOSE MEDIUM (DSMZ Medium 82) Composition: Brain heart infusion 18.5 g/l Agar 12.0 g/l Glucose 5.0 g/l Distilled water
10698	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10698	positive	growth	45
67770	positive	growth	40

Physiology and metabolism

Observation

67770

Observationquinones: MK-8(H₄)

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	cardiolipin biosynthesis	100	7 of 7
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	gallate degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	phenylmercury acetate degradation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	vitamin K metabolism	100	5 of 5
66794	cellulose degradation	100	5 of 5
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	myo-inositol biosynthesis	100	10 of 10
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	photosynthesis	92.86	13 of 14
66794	citric acid cycle	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	vitamin B12 metabolism	91.18	31 of 34
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	ketogluconate metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	flavin biosynthesis	86.67	13 of 15
66794	3-phenylpropionate degradation	86.67	13 of 15
66794	glutathione metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	purine metabolism	85.11	80 of 94
66794	glycolysis	82.35	14 of 17
66794	pyrimidine metabolism	82.22	37 of 45
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	metabolism of disaccharids	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	degradation of sugar alcohols	81.25	13 of 16
66794	glycogen metabolism	80	4 of 5
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	phenol degradation	80	16 of 20
66794	d-mannose degradation	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	urea cycle	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	histidine metabolism	75.86	22 of 29
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	methionine metabolism	73.08	19 of 26
66794	proline metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	tyrosine metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	bile acid biosynthesis, neutral pathway	70.59	12 of 17
66794	oxidative phosphorylation	70.33	64 of 91
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	sulfate reduction	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	cyanate degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	daunorubicin biosynthesis	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	d-xylose degradation	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	lysine metabolism	61.9	26 of 42
66794	degradation of sugar acids	60	15 of 25
66794	coenzyme M biosynthesis	60	6 of 10
66794	creatinine degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	arginine metabolism	58.33	14 of 24
66794	degradation of pentoses	57.14	16 of 28
66794	degradation of hexoses	55.56	10 of 18
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	quinate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	alginate biosynthesis	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	lipid A biosynthesis	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	3-chlorocatechol degradation	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	chlorophyll metabolism	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Host	#Fungi	#Mushroom
#Engineered	#Agriculture	-

Isolation

@ref	Sample type
10698	mushroom compost
67770	Mushroom compost

Taxonmaps

69479

Global distribution of 16S sequence AJ252830 (>99% sequence identity) for Pseudonocardia thermophila subclade from Microbeatlas

Aquatic Samples	93
Soil Samples	798
Animal Samples	269
Plant Samples	94
Total Samples	1254

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10698	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Actinomyces viscosus partial 16S rRNA	X53225	1475		1656
67770	Pseudonocardia thermophila 16S rRNA gene, strain IMSNU 20112T	AJ252830	1520		1848

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Enzymology	Distribution, purification, and characterization of thermostable phenylalanine dehydrogenase from thermophilic actinomycetes.	Ohshima T, Takada H, Yoshimura T, Esaki N, Soda K.	J Bacteriol	10.1128/jb.173.13.3943-3948.1991	1991
Phylogeny	Pseudonocardia mongoliensis sp. nov. and Pseudonocardia khuvsgulensis sp. nov., isolated from soil.	Ara I, Tsetseg B, Daram D, Suto M, Ando K	Int J Syst Evol Microbiol	10.1099/ijs.0.019562-0	2010

References

#10698	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43027
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Pseudonocardia thermophila (DSM 43027, CBS 350.63, IFO 12133)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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